Mario dos Reis
TitleCited byYear
Solving the riddle of codon usage preferences: a test for translational selection
M dos Reis, R Savva, L Wernisch
Nucleic acids research 32 (17), 5036-5044, 2004
4812004
Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny
M dos Reis, J Inoue, M Hasegawa, RJ Asher, PCJ Donoghue, Z Yang
Proceedings of the Royal Society of London B: Biological Sciences 279 (1742 …, 2012
3562012
Statistical properties of the branch-site test of positive selection
Z Yang, M dos Reis
Molecular biology and evolution 28 (3), 1217-1228, 2011
2202011
Churchill, a zinc finger transcriptional activator, regulates the transition between gastrulation and neurulation
G Sheng, M dos Reis, CD Stern
Cell 115 (5), 603-613, 2003
1942003
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K‐12 genome
M dos Reis, L Wernisch, R Savva
Nucleic acids research 31 (23), 6976-6985, 2003
1702003
Uncertainty in the timing of origin of animals and the limits of precision in molecular timescales
M dos Reis, Y Thawornwattana, K Angelis, MJ Telford, PCJ Donoghue, ...
Current Biology 25 (22), R1079-R1081, 2015
1682015
Bayesian molecular clock dating of species divergences in the genomics era
M dos Reis, PCJ Donoghue, Z Yang
Nature Reviews Genetics 17 (2), 71-80, 2016
1242016
The interrelationships of placental mammals and the limits of phylogenetic inference
JE Tarver, M dos Reis, S Mirarab, RJ Moran, S Parker, JE O’Reilly, ...
Genome biology and evolution 8 (2), 330-344, 2016
1102016
Identifying changes in selective constraints: host shifts in influenza
AU Tamuri, M dos Reis, AJ Hay, RA Goldstein
PLoS Comput Biol 5 (11), e1000564, 2009
1092009
Approximate Likelihood Calculation on a Phylogeny for Bayesian Estimation of Divergence Times
M dos Reis, Z Yang
Molecular Biology and Evolution 28 (7), 2161-2172, 2011
1082011
Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models
AU Tamuri, M dos Reis, RA Goldstein
Genetics 190 (3), 1101-1115, 2012
882012
Estimating translational selection in eukaryotic genomes
M dos Reis, L Wernisch
Molecular biology and evolution 26 (2), 451-461, 2009
792009
Dating Tips for Divergence-Time Estimation
JE O’Reilly, M dos Reis, PCJ Donoghue
Trends in Genetics 31 (11), 637-650, 2015
762015
Neither phylogenomic nor palaeontological data support a Palaeogene origin of placental mammals
M dos Reis, PCJ Donoghue, Z Yang
Biology letters 10 (1), 20131003, 2014
762014
The unbearable uncertainty of Bayesian divergence time estimation
M dos Reis, Z Yang
Journal of Systematics and Evolution 51 (1), 30-43, 2013
752013
The impact of the rate prior on Bayesian estimation of divergence times with multiple loci
M dos Reis, T Zhu, Z Yang
Systematic biology 63, 555-565, 2014
632014
Archaeology and evolution of transfer RNA genes in the Escherichia coli genome
M Withers, L Wernisch, M dos Reis
Rna 12 (6), 933-942, 2006
482006
Using non-homogeneous models of nucleotide substitution to identify host shift events: application to the origin of the 1918 ‘Spanish’influenza pandemic virus
M dos Reis, AJ Hay, RA Goldstein
Journal of molecular evolution 69 (4), 333-345, 2009
442009
Using phylogenomic data to explore the effects of relaxed clocks and calibration strategies on divergence time estimation: Primates as a test case
M dos Reis, GF Gunnell, J Barba-Montoya, A Wilkins, Z Yang, A Yoder
Systematic Biology 67 (4), 594-615, 2018
432018
Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci
T Zhu, M dos Reis, Z Yang
Systematic biology 64 (2), 267-280, 2014
412014
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Articles 1–20