Yu Zhang - Google Scholar Citations

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	All	Since 2014
Citations	4835	3183
h-index	23	17
i10-index	40	24

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Co-authors

Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
Ross C. HardisonProfessor of Biochemistry and Molecular Biology, The Pennsylvania State UniversityVerified email at psu.edu
Belinda Giardinecomputer programmer, Penn State UniversityVerified email at bx.psu.edu
James TaylorProfessor of Biology and Computer Science, Johns Hopkins UniversityVerified email at jhu.edu
Stephan C. SchusterNanyang Technological University Singapore, SCELSEVerified email at ntu.edu.sg
Giltae SongAssistant Professor, Pusan National University, South KoreaVerified email at pusan.ac.kr
Chun Kit KwokAssistant Professor, Department of Chemistry, City University of Hong KongVerified email at cityu.edu.hk
Philip BevilacquaProfessor of Chemistry, The Pennsylvania State UniversityVerified email at psu.edu
Yin TangYale UniversityVerified email at yale.edu
Yiliang DingProject Leader, Department of Cell and Developmental Biology, John Innes Centre, UKVerified email at jic.ac.uk
Aakrosh RatanUniversity of VirginiaVerified email at bx.psu.edu
Francesca ChiaromonteProfessor of Statistics, Pennsylvania State University, Sant'Anna School of Advanced StudiesVerified email at psu.edu
Yong ChengSt.Jude Children's Research HospitalVerified email at stjude.org
Cheryl A. Keller Capone, PhD, CPTThe Pennsylvania State UniversityVerified email at psu.edu
Gerd BlobelChildren's Hospital of PhiladelphiaVerified email at email.chop.edu
Swathi A. KumarBioinformatics ScientistVerified email at illumina.com
Chris MorrisseyBioage LabsVerified email at berkeley.edu
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Tomas VinarComenius University in BratislavaVerified email at fmph.uniba.sk

Yu Zhang

Associate Professor of Statistics, The Pennsylvania State University

Verified email at psu.edu - Homepage

Computational Biology Method Development


Title	Cited by	Year
Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005	2007	2005
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features Y Ding, Y Tang, CK Kwok, Y Zhang, PC Bevilacqua, SM Assmann Nature 505 (7485), 696, 2014	489	2014
Bayesian inference of epistatic interactions in case-control studies Y Zhang, JS Liu Nature genetics 39 (9), 1167, 2007	461	2007
Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943, 2010	428	2010
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) W Miller, VM Hayes, A Ratan, DC Petersen, NE Wittekindt, J Miller, ... Proceedings of the National Academy of Sciences 108 (30), 12348-12353, 2011	184	2011
The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus) W Miller, DI Drautz, JE Janecka, AM Lesk, A Ratan, LP Tomsho, ... Genome research 19 (2), 213-220, 2009	125	2009
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ... Genome research 21 (10), 1659-1671, 2011	115	2011
Dynamic functional connectomics signatures for characterization and differentiation of PTSD patients X Li, D Zhu, X Jiang, C Jin, X Zhang, L Guo, J Zhang, X Hu, L Li, T Liu Human brain mapping 35 (4), 1761-1778, 2014	113	2014
Detecting and understanding combinatorial mutation patterns responsible for HIV drug resistance J Zhang, T Hou, W Wang, JS Liu Proceedings of the National Academy of Sciences 107 (4), 1321-1326, 2010	82	2010
Alignment of optical maps A Valouev, L Li, YC Liu, DC Schwartz, Y Yang, Y Zhang, MS Waterman Journal of Computational Biology 13 (2), 442-462, 2006	73	2006
Calling SNPs without a reference sequence A Ratan, Y Zhang, VM Hayes, SC Schuster, W Miller BMC bioinformatics 11 (1), 130, 2010	52	2010
Jointly characterizing epigenetic dynamics across multiple human cell types Y Zhang, L An, F Yue, RC Hardison Nucleic acids research 44 (14), 6721-6731, 2016	43	2016
A novel bayesian graphical model for genome‐wide multi‐SNP association mapping Y Zhang Genetic epidemiology 36 (1), 36-47, 2012	40	2012
Characterizing and differentiating brain state dynamics via hidden Markov models J Ou, L Xie, C Jin, X Li, D Zhu, R Jiang, Y Chen, J Zhang, L Li, T Liu Brain topography 28 (5), 666-679, 2015	39	2015
An Eulerian path approach to global multiple alignment for DNA sequences Y Zhang, MS Waterman Journal of Computational Biology 10 (6), 803-819, 2003	38	2003
Inferring functional interaction and transition patterns via dynamic Bayesian variable partition models J Zhang, X Li, C Li, Z Lian, X Huang, G Zhong, D Zhu, K Li, C Jin, X Hu, ... Human brain mapping 35 (7), 3314-3331, 2014	36	2014
Refinement of optical map assemblies A Valouev, Y Zhang, DC Schwartz, MS Waterman Bioinformatics 22 (10), 1217-1224, 2006	36	2006
An Eulerian path approach to local multiple alignment for DNA sequences Y Zhang, MS Waterman Proceedings of the National Academy of Sciences 102 (5), 1285-1290, 2005	35	2005
A coalescence-guided hierarchical Bayesian method for haplotype inference Y Zhang, T Niu, JS Liu The American Journal of Human Genetics 79 (2), 313-322, 2006	33	2006
Block-based bayesian epistasis association mapping with application to WTCCC type 1 diabetes data Y Zhang, J Zhang, JS Liu The annals of applied statistics 5 (3), 2052, 2011	29	2011

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