| Initial sequencing and comparative analysis of the mouse genome Mouse Genome Sequencing Consortium Nature 420 (6915), 520, 2002 | 6756 | 2002 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution International Chicken Genome Sequencing Consortium Nature 432 (7018), 695, 2004 | 2231 | 2004 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution Rat Genome Sequencing Project Consortium Nature 428 (6982), 493, 2004 | 2055 | 2004 |
| Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943, 2010 | 428 | 2010 |
| Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution RC Hardison, KM Roskin, S Yang, M Diekhans, WJ Kent, R Weber, ... Genome research 13 (1), 13-26, 2003 | 320 | 2003 |
| Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis RA Gutiérrez, LV Lejay, A Dean, F Chiaromonte, DE Shasha, GM Coruzzi Genome biology 8 (1), R7, 2007 | 263 | 2007 |
| Contour regression: a general approach to dimension reduction B Li, H Zha, F Chiaromonte The Annals of Statistics 33 (4), 1580-1616, 2005 | 251 | 2005 |
| The genome-wide determinants of human and chimpanzee microsatellite evolution YD Kelkar, S Tyekucheva, F Chiaromonte, KD Makova Genome research 18 (1), 30-38, 2008 | 233 | 2008 |
| Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences DC King, J Taylor, L Elnitski, F Chiaromonte, W Miller, RC Hardison Genome research 15 (8), 1051-1060, 2005 | 231 | 2005 |
| Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression Y Cheng, W Wu, SA Kumar, D Yu, W Deng, T Tripic, DC King, KB Chen, ... Genome research 19 (12), 2172-2184, 2009 | 209 | 2009 |
| Scoring pairwise genomic sequence alignments F Chiaromonte, VB Yap, W Miller Biocomputing 2002, 115-126, 2001 | 200 | 2001 |
| Distinguishing regulatory DNA from neutral sites L Elnitski, RC Hardison, J Li, S Yang, D Kolbe, P Eswara, MJ O'Connor, ... Genome research 13 (1), 64-72, 2003 | 169 | 2003 |
| Heterogeneity, competition, and macroeconomic dynamics F Chiaromonte, G Dosi Structural Change and Economic Dynamics 4 (1), 39-63, 1993 | 150 | 1993 |
| Sufficient dimensions reduction in regressions with categorical predictors F Chiaromonte, RD Cook, B Li The Annals of Statistics 30 (2), 475-497, 2002 | 146 | 2002 |
| ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements J Taylor, S Tyekucheva, DC King, RC Hardison, W Miller, F Chiaromonte Genome research 16 (12), 1596-1604, 2006 | 145 | 2006 |
| Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat D Kolbe, J Taylor, L Elnitski, P Eswara, J Li, W Miller, R Hardison, ... Genome research 14 (4), 700-707, 2004 | 139 | 2004 |
| Envelope models for parsimonious and efficient multivariate linear regression RD Cook, B Li, F Chiaromonte Statistica Sinica, 927-960, 2010 | 129 | 2010 |
| Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ... Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014 | 126 | 2014 |
| Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ... Genome research 21 (10), 1659-1671, 2011 | 115 | 2011 |
| A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome? A Fungtammasan, E Walsh, F Chiaromonte, KA Eckert, KD Makova Genome research 22 (6), 993-1005, 2012 | 114 | 2012 |
