| Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. GI Arabidopsis Nature 408 (6814), 796, 2000 | 9007 | 2000 |
| Genome sequence of the human malaria parasite Plasmodium falciparum MJ Gardner, N Hall, E Fung, O White, M Berriman, RW Hyman, JM Carlton, ... Nature 419 (6906), 498, 2002 | 4454 | 2002 |
| The ENCODE (ENCyclopedia of DNA elements) project ENCODE Project Consortium Science 306 (5696), 636-640, 2004 | 1522 | 2004 |
| Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ... Nature 438 (7071), 1151, 2005 | 1294 | 2005 |
| StringTie enables improved reconstruction of a transcriptome from RNA-seq reads M Pertea, GM Pertea, CM Antonescu, TC Chang, JT Mendell, SL Salzberg Nature biotechnology 33 (3), 290, 2015 | 1291 | 2015 |
| Genome sequence of Aedes aegypti, a major arbovirus vector V Nene, JR Wortman, D Lawson, B Haas, C Kodira, ZJ Tu, B Loftus, Z Xi, ... Science 316 (5832), 1718-1723, 2007 | 1061 | 2007 |
| The genome of the blood fluke Schistosoma mansoni M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ... Nature 460 (7253), 352, 2009 | 954 | 2009 |
| Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ... Nature 419 (6906), 512, 2002 | 808 | 2002 |
| Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis JM Carlton, RP Hirt, JC Silva, AL Delcher, M Schatz, Q Zhao, JR Wortman, ... Science 315 (5809), 207-212, 2007 | 795 | 2007 |
| Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg Nature protocols 11 (9), 1650, 2016 | 780 | 2016 |
| The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans BJ Loftus, E Fung, P Roncaglia, D Rowley, P Amedeo, D Bruno, ... Science 307 (5713), 1321-1324, 2005 | 710 | 2005 |
| Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9 (1), R7, 2008 | 661 | 2008 |
| Draft genome of the filarial nematode parasite Brugia malayi E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ... Science 317 (5845), 1756-1760, 2007 | 604 | 2007 |
| TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders WH Majoros, M Pertea, SL Salzberg Bioinformatics 20 (16), 2878-2879, 2004 | 544 | 2004 |
| Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum MJ Gardner, H Tettelin, DJ Carucci, LM Cummings, L Aravind, EV Koonin, ... Science 282 (5391), 1126-1132, 1998 | 544 | 1998 |
| GeneSplicer: a new computational method for splice site prediction M Pertea, X Lin, SL Salzberg Nucleic acids research 29 (5), 1185-1190, 2001 | 507 | 2001 |
| Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations K Deng, M Pertea, A Rongvaux, L Wang, CM Durand, G Ghiaur, J Lai, ... Nature 517 (7534), 381, 2015 | 354 | 2015 |
| Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes MJ Gardner, R Bishop, T Shah, EP De Villiers, JM Carlton, N Hall, Q Ren, ... Science 309 (5731), 134-137, 2005 | 327 | 2005 |
| In-depth view of structure, activity, and evolution of rice chromosome 10 Rice Chromosome 10 Sequencing Consortium Science 300 (5625), 1566-1569, 2003 | 253 | 2003 |
| Between a chicken and a grape: estimating the number of human genes M Pertea, SL Salzberg Genome biology 11 (5), 206, 2010 | 238 | 2010 |
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
