| Initial sequencing and comparative analysis of the mouse genome Mouse Genome Sequencing Consortium Nature 420 (6915), 520, 2002 | 6759 | 2002 |
| Genome sequence of the Brown Norway rat yields insights into mammalian evolution Rat Genome Sequencing Project Consortium Nature 428 (6982), 493, 2004 | 2055 | 2004 |
| The similarity metric M Li, X Chen, X Li, B Ma, PMB Vitányi IEEE transactions on Information Theory 50 (12), 3250-3264, 2004 | 1287 | 2004 |
| PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry B Ma, K Zhang, C Hendrie, C Liang, M Li, A Doherty‐Kirby, G Lajoie Rapid communications in mass spectrometry 17 (20), 2337-2342, 2003 | 1100 | 2003 |
| PatternHunter: faster and more sensitive homology search B Ma, J Tromp, M Li Bioinformatics 18 (3), 440-445, 2002 | 936 | 2002 |
| PEAKS DB: De Novo sequencing assisted database search for sensitive and accurate peptide identification J Zhang, L Xin, B Shan, W Chen, M Xie, D Yuen, W Zhang, Z Zhang, ... Molecular & Cellular Proteomics, 2011 | 538 | 2011 |
| PatternHunter II: Highly sensitive and fast homology search M Li, B Ma, D Kisman, J Tromp Journal of bioinformatics and computational biology 2 (03), 417-439, 2004 | 274 | 2004 |
| ZOOM! Zillions of oligos mapped H Lin, Z Zhang, MQ Zhang, B Ma, M Li Bioinformatics 24 (21), 2431-2437, 2008 | 271 | 2008 |
| Distinguishing string selection problems JK Lanctot, M Li, B Ma, S Wang, L Zhang Information and Computation 185 (1), 41-55, 2003 | 271 | 2003 |
| DNACompress: fast and effective DNA sequence compression X Chen, M Li, B Ma, J Tromp Bioinformatics 18 (12), 1696-1698, 2002 | 265 | 2002 |
| SPIDER: software for protein identification from sequence tags with de novo sequencing error Y Han, B Ma, K Zhang Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004 | 234 | 2004 |
| A general edit distance between RNA structures T Jiang, G Lin, B Ma, K Zhang Journal of computational biology 9 (2), 371-388, 2002 | 229 | 2002 |
| On the closest string and substring problems M Li, B Ma, L Wang Journal of the ACM (JACM) 49 (2), 157-171, 2002 | 227 | 2002 |
| From gene trees to species trees B Ma, M Li, L Zhang SIAM Journal on Computing 30 (3), 729-752, 2000 | 182 | 2000 |
| Finding similar regions in many strings M Li, B Ma, L Wang STOC 99, 473-482, 1999 | 161 | 1999 |
| On spaced seeds for similarity search U Keich, M Li, B Ma, J Tromp Discrete Applied Mathematics 138 (3), 253-263, 2004 | 155 | 2004 |
| Chain letters and evolutionary histories CH Bennett, M Li, B Ma SCIENTIFIC AMERICAN-AMERICAN EDITION- 288 (6), 76-81, 2003 | 146 | 2003 |
| Mobility limited flip-based sensor networks deployment S Chellappan, X Bai, B Ma, D Xuan, C Xu IEEE Transactions on Parallel and Distributed Systems 18 (2), 199-211, 2007 | 144 | 2007 |
| De novo sequencing and homology searching B Ma, R Johnson Molecular & cellular proteomics 11 (2), O111. 014902, 2012 | 142 | 2012 |
| Finding similar regions in many sequences M Li, B Ma, L Wang Journal of Computer and System Sciences 65 (1), 73-96, 2002 | 125 | 2002 |
