| The genomic landscape of species divergence in Ficedula flycatchers H Ellegren, L Smeds, R Burri, PI Olason, N Backström, T Kawakami, ... Nature 491 (7426), 756, 2012 | 481 | 2012 |
| Contrasting patterns of body shape and neutral genetic divergence in marine and lake populations of threespine sticklebacks T Leinonen, JM Cano, H Mäkinen, J Merilä Journal of evolutionary biology 19 (6), 1803-1812, 2006 | 193 | 2006 |
| Identifying footprints of directional and balancing selection in marine and freshwater three‐spined stickleback (Gasterosteus aculeatus) populations HS Mäkinen, JM Cano, J Merilä Molecular Ecology 17 (15), 3565-3582, 2008 | 146 | 2008 |
| Genetic relationships among marine and freshwater populations of the European three‐spined stickleback (Gasterosteus aculeatus) revealed by microsatellites HS Mäkinen, JM Cano, J Merilä Molecular Ecology 15 (6), 1519-1534, 2006 | 134 | 2006 |
| Mitochondrial DNA phylogeography of the three-spined stickleback (Gasterosteus aculeatus) in Europe—Evidence for multiple glacial refugia HS Mäkinen, J Merilä Molecular Phylogenetics and Evolution 46 (1), 167-182, 2008 | 109 | 2008 |
| Microsatellite variation in ringed seals (Phoca hispida): genetic structure and history of the Baltic Sea population JU Palo, HS Mäkinen, E Helle, O Stenman, R Väinölä Heredity 86 (5), 609-617, 2001 | 57 | 2001 |
| Genetic evidence for male‐biased dispersal in the three‐spined stickleback (Gasterosteus aculeatus) JM Cano, HS Mäkinen, J Merilä Molecular Ecology 17 (14), 3234-3242, 2008 | 55 | 2008 |
| Hitchhiking mapping reveals a candidate genomic region for natural selection in three-spined stickleback chromosome VIII HS Mäkinen, T Shikano, JM Cano, J Merilä Genetics 178 (1), 453-465, 2008 | 54 | 2008 |
| The utility of QTL‐Linked markers to detect selective sweeps in natural populations — a case study of the EDA gene and a linked marker in threespine stickleback JM Cano, C Matsuba, H Mäkinen, J Merilä Molecular Ecology 15 (14), 4613-4621, 2006 | 47 | 2006 |
| Transcriptome sequencing reveals the character of incomplete dosage compensation across multiple tissues in flycatchers S Uebbing, A Künstner, H Mäkinen, H Ellegren Genome biology and evolution 5 (8), 1555-1566, 2013 | 46 | 2013 |
| Extreme neutral genetic and morphological divergence supports classification of Adriatic three-spined stickleback (Gasterosteus aculeatus) populations as distinct conservation … JM Cano, HS Mäkinen, T Leinonen, J Freyhof, J Merilä Biological Conservation 141 (4), 1055-1066, 2008 | 33 | 2008 |
| Divergence in gene expression within and between two closely related flycatcher species S Uebbing, A Künstner, H Mäkinen, N Backström, P Bolivar, R Burri, ... Molecular ecology 25 (9), 2015-2028, 2016 | 29 | 2016 |
| Population genomic analyses of early‐phase Atlantic Salmon (Salmo salar) domestication/captive breeding H Mäkinen, A Vasemägi, P McGinnity, TF Cross, CR Primmer Evolutionary applications 8 (1), 93-107, 2015 | 29 | 2015 |
| Postglacial loss of microsatellite variation in the landlocked Lake Saimaa ringed seal JU Palo, H Hyvärinen, E Helle, HS Mäkinen, R Väinölä Conservation Genetics 4 (2), 117-128, 2003 | 29 | 2003 |
| Plastic and Evolutionary Gene Expression Responses Are Correlated in European Grayling ( Thymallus thymallus ) Subpopulations Adapted to … H Mäkinen, S Papakostas, LA Vøllestad, EH Leder, CR Primmer Journal of Heredity 107 (1), 82-89, 2015 | 23 | 2015 |
| Genomic signatures of fine‐scale local selection in Atlantic salmon suggest involvement of sexual maturation, energy homeostasis and immune defence‐related genes VL Pritchard, H Mäkinen, JP Vähä, J Erkinaro, P Orell, CR Primmer Molecular ecology 27 (11), 2560-2575, 2018 | 18 | 2018 |
| A hyperparasite affects the population dynamics of a wild plant pathogen C Tollenaere, B Pernechele, HS Mäkinen, SR Parratt, MZ Németh, ... Molecular ecology 23 (23), 5877-5887, 2014 | 17 | 2014 |
| Cross-species amplification of microsatellite loci for nine-spined stickleback Pungitius pungitius HS Mäkinen, K Välimäki, J Merilä Annales Zoologici Fennici, 218-224, 2007 | 10 | 2007 |
| Displaced phylogeographic signals from Gyrodactylus arcuatus, a parasite of the three-spined stickleback Gasterosteus aculeatus, suggest freshwater glacial refugia in Europe J Lumme, H Mäkinen, AV Ermolenko, JL Gregg, MS Ziętara International journal for parasitology 46 (9), 545-554, 2016 | 4 | 2016 |
| Temporally replicated DNA methylation patterns in great tit using reduced representation bisulfite sequencing H Mäkinen, HM Viitaniemi, ME Visser, I Verhagen, K van Oers, A Husby Scientific data 6 (1), 1-7, 2019 | 3 | 2019 |