Daniele De Martino
Daniele De Martino
Biofisika Institute - Ikerbasque
Dirección de correo verificada de ijs.si
TítuloCitado porAño
Congestion phenomena on complex networks
D De Martino, L Dall’Asta, G Bianconi, M Marsili
Physical Review E 79 (1), 015101, 2009
1312009
Uniform sampling of steady states in metabolic networks: heterogeneous scales and rounding
D De Martino, M Mori, V Parisi
PloS one 10 (4), e0122670, 2015
402015
A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks
D De Martino, M Figliuzzi, A De Martino, E Marinari
PLoS computational biology 8 (6), e1002562, 2012
392012
Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks
D De Martino, F Capuani, M Mori, A De Martino, E Marinari
Metabolites 3 (4), 946-966, 2013
382013
Dynamic facilitation picture of a higher-order glass singularity
M Sellitto, D De Martino, F Caccioli, JJ Arenzon
Physical review letters 105 (26), 265704, 2010
332010
Growth against entropy in bacterial metabolism: the phenotypic trade-off behind empirical growth rate distributions in E. coli
D De Martino, F Capuani, A De Martino
Physical biology 13 (3), 036005, 2016
232016
A minimal model for congestion phenomena on complex networks
D De Martino, L Dall’Asta, G Bianconi, M Marsili
Journal of Statistical Mechanics: Theory and Experiment 2009 (08), P08023, 2009
212009
Phase transitions in crowd dynamics of resource allocation
A Ghosh, D De Martino, A Chatterjee, M Marsili, BK Chakrabarti
Physical Review E 85 (2), 021116, 2012
182012
Shear-and vibration-induced order-disorder transitions in granular media
MP Ciamarra, A Coniglio, D De Martino, M Nicodemi
The European Physical Journal E 24 (4), 411-415, 2007
172007
Thermodynamics of biochemical networks and duality theorems
D De Martino
Physical Review E 87 (5), 052108, 2013
162013
An introduction to the maximum entropy approach and its application to inference problems in biology
A De Martino, D De Martino
Heliyon 4 (4), e00596, 2018
132018
Statistical mechanics for metabolic networks during steady state growth
D De Martino, AMC Andersson, T Bergmiller, CC Guet, G Tkačik
Nature communications 9 (1), 2988, 2018
112018
Quantifying the entropic cost of cellular growth control
D De Martino, F Capuani, A De Martino
Physical Review E 96 (1), 010401, 2017
112017
Reaction networks as systems for resource allocation: A variational principle for their non-equilibrium steady states
A De Martino, D De Martino, R Mulet, G Uguzzoni
PloS one 7 (7), e39849, 2012
82012
Quantitative constraint-based computational model of tumor-to-stroma coupling via lactate shuttle
F Capuani, D De Martino, E Marinari, A De Martino
Scientific reports 5, 11880, 2015
72015
Maximum entropy modeling of metabolic networks by constraining growth-rate moments predicts coexistence of phenotypes
D De Martino
Physical Review E 96 (6), 060401, 2017
6*2017
Inferring metabolic phenotypes from the exometabolome through a thermodynamic variational principle
D De Martino, F Capuani, A De Martino
New Journal of Physics 16 (11), 115018, 2014
62014
Identifying all moiety conservation laws in genome-scale metabolic networks
A De Martino, D De Martino, R Mulet, A Pagnani
PloS one 9 (7), e100750, 2014
52014
Asymptotic analysis of noisy fitness maximization, applied to metabolism & growth
D De Martino, D Masoero
Journal of Statistical Mechanics: Theory and Experiment 2016 (12), 123502, 2016
42016
On the role of volatility in the evolution of social networks
D De Martino, M Marsili
The European Physical Journal B 65 (4), 595, 2008
42008
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Artículos 1–20