| Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796, 2012 | 1079 | 2012 |
| The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts AG Baltz, M Munschauer, B Schwanhäusser, A Vasile, Y Murakawa, ... Molecular cell 46 (5), 674-690, 2012 | 771 | 2012 |
| A validated regulatory network for Th17 cell specification M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ... Cell 151 (2), 289-303, 2012 | 723 | 2012 |
| Innate immune detection of the type III secretion apparatus through the NLRC4 inflammasome EA Miao, DP Mao, N Yudkovsky, R Bonneau, CG Lorang, SE Warren, ... Proceedings of the National Academy of Sciences 107 (7), 3076-3080, 2010 | 645 | 2010 |
| Ab initio protein structure prediction of CASP III targets using ROSETTA KT Simons, R Bonneau, I Ruczinski, D Baker Proteins: Structure, Function, and Bioinformatics 37 (S3), 171-176, 1999 | 581 | 1999 |
| Tweeting from left to right: Is online political communication more than an echo chamber? P Barberá, JT Jost, J Nagler, JA Tucker, R Bonneau Psychological science 26 (10), 1531-1542, 2015 | 568 | 2015 |
| The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo R Bonneau, DJ Reiss, P Shannon, M Facciotti, L Hood, NS Baliga, ... Genome biology 7 (5), R36, 2006 | 512 | 2006 |
| Structural bioinformatics J Gu, PE Bourne John Wiley & Sons, 2009 | 440 | 2009 |
| Ab initio protein structure prediction: progress and prospects R Bonneau, D Baker Annual review of biophysics and biomolecular structure 30 (1), 173-189, 2001 | 384 | 2001 |
| Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea NS Baliga, R Bonneau, MT Facciotti, M Pan, G Glusman, EW Deutsch, ... Genome research 14 (11), 2221-2234, 2004 | 347 | 2004 |
| Rosetta in CASP4: progress in ab initio protein structure prediction R Bonneau, J Tsai, I Ruczinski, D Chivian, C Rohl, CEM Strauss, D Baker Proteins: Structure, Function, and Bioinformatics 45 (S5), 119-126, 2001 | 329 | 2001 |
| Automated prediction of CASP‐5 structures using the Robetta server D Chivian, DE Kim, L Malmström, P Bradley, T Robertson, P Murphy, ... Proteins: Structure, Function, and Bioinformatics 53 (S6), 524-533, 2003 | 313 | 2003 |
| A predictive model for transcriptional control of physiology in a free living cell R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ... Cell 131 (7), 1354-1365, 2007 | 299 | 2007 |
| De novo prediction of three-dimensional structures for major protein families R Bonneau, CEM Strauss, CA Rohl, D Chivian, P Bradley, L Malmström, ... Journal of molecular biology 322 (1), 65-78, 2002 | 297 | 2002 |
| Sparse and compositionally robust inference of microbial ecological networks ZD Kurtz, CL Müller, ER Miraldi, DR Littman, MJ Blaser, RA Bonneau PLoS computational biology 11 (5), e1004226, 2015 | 296 | 2015 |
| Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks DJ Reiss, NS Baliga, R Bonneau BMC bioinformatics 7 (1), 280, 2006 | 272 | 2006 |
| An IL-23R/IL-22 circuit regulates epithelial serum amyloid A to promote local effector Th17 responses T Sano, W Huang, JA Hall, Y Yang, A Chen, SJ Gavzy, JY Lee, JW Ziel, ... Cell 163 (2), 381-393, 2015 | 240 | 2015 |
| CX3CR1+ mononuclear phagocytes support colitis-associated innate lymphoid cell production of IL-22 RS Longman, GE Diehl, DA Victorio, JR Huh, C Galan, ER Miraldi, ... Journal of Experimental Medicine 211 (8), 1571-1583, 2014 | 205 | 2014 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 184, 2016 | 199 | 2016 |
| Somatodendritic microRNAs identified by laser capture and multiplex RT-PCR MJ Kye, T Liu, SF Levy, NL Xu, BB Groves, R Bonneau, K Lao, KS Kosik Rna 13 (8), 1224-1234, 2007 | 196 | 2007 |
Dan LittmanNYU Langone Medical CenterVerified email at med.nyu.edu
