| A robust SNP barcode for typing Mycobacterium tuberculosis complex strains F Coll, R McNerney, JA Guerra-Assuncao, JR Glynn, J Perdigao, ... Nature communications 5, 4812, 2014 | 235 | 2014 |
| Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences F Coll, R McNerney, MD Preston, JA Guerra-Assunção, A Warry, ... Genome medicine 7 (1), 51, 2015 | 171 | 2015 |
| Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area JA Guerra-Assunção, AC Crampin, R Houben, T Mzembe, K Mallard, ... Elife 4, e05166, 2015 | 120 | 2015 |
| Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a … JA Guerra-Assunção, RMGJ Houben, AC Crampin, T Mzembe, K Mallard, ... The Journal of infectious diseases 211 (7), 1154-1163, 2014 | 92 | 2014 |
| Genome-wide analysis of multi-and extensively drug-resistant Mycobacterium tuberculosis F Coll, J Phelan, GA Hill-Cawthorne, MB Nair, K Mallard, S Ali, ... Nature genetics 50 (2), 307, 2018 | 84 | 2018 |
| SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences F Coll, K Mallard, MD Preston, S Bentley, J Parkhill, R McNerney, N Martin, ... Bioinformatics 28 (22), 2991-2993, 2012 | 73 | 2012 |
| PolyTB: a genomic variation map for Mycobacterium tuberculosis F Coll, M Preston, JA Guerra-Assunção, G Hill-Cawthorn, D Harris, ... Tuberculosis 94 (3), 346-354, 2014 | 67 | 2014 |
| Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ... BMC medicine 14 (1), 31, 2016 | 62 | 2016 |
| Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing TG Clark, K Mallard, F Coll, M Preston, S Assefa, D Harris, S Ogwang, ... PloS one 8 (12), e83012, 2013 | 55 | 2013 |
| Whole genome sequencing based characterization of extensively drug-resistant Mycobacterium tuberculosis isolates from Pakistan A Ali, Z Hasan, R McNerney, K Mallard, G Hill-Cawthorne, F Coll, M Nair, ... PloS one 10 (2), e0117771, 2015 | 53 | 2015 |
| Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting J Perdigão, H Silva, D Machado, R Macedo, F Maltez, C Silva, L Jordao, ... BMC genomics 15 (1), 991, 2014 | 48 | 2014 |
| Whole-genome sequencing coupled to imputation discovers genetic signals for anthropometric traits I Tachmazidou, D Süveges, JL Min, GRS Ritchie, J Steinberg, K Walter, ... The American Journal of Human Genetics 100 (6), 865-884, 2017 | 43* | 2017 |
| Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community F Coll, EM Harrison, MS Toleman, S Reuter, KE Raven, B Blane, ... Science translational medicine 9 (413), eaak9745, 2017 | 42 | 2017 |
| Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ... Scientific reports 5, 15443, 2015 | 39 | 2015 |
| Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages JE Phelan, F Coll, I Bergval, RM Anthony, R Warren, SL Sampson, ... BMC genomics 17 (1), 151, 2016 | 35 | 2016 |
| Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing KE Raven, T Gouliouris, H Brodrick, F Coll, NM Brown, R Reynolds, ... Clinical infectious diseases 64 (7), 886-893, 2017 | 31 | 2017 |
| Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites H Samad, F Coll, MD Preston, H Ocholla, RM Fairhurst, TG Clark PLoS genetics 11 (4), e1005131, 2015 | 25 | 2015 |
| Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of … MS Toleman, S Reuter, F Coll, EM Harrison, B Blane, NM Brown, ... The Journal of infectious diseases 214 (3), 447-453, 2016 | 24 | 2016 |
| Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks EM Harrison, C Ludden, HJ Brodrick, B Blane, G Brennan, D Morris, ... Genome medicine 8 (1), 102, 2016 | 21 | 2016 |
| A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nat Commun 5: 4812 F Coll, R McNerney, JA Guerra-Assuncao, JR Glynn, J Perdigão, ... | 19 | 2014 |
