| A whole-genome assembly of the domestic cow, Bos taurus AV Zimin, AL Delcher, L Florea, DR Kelley, MC Schatz, D Puiu, ... Genome biology 10 (4), R42, 2009 | 955 | 2009 |
| GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012 | 646 | 2012 |
| The genome of Cryptosporidium hominis P Xu, G Widmer, Y Wang, LS Ozaki, JM Alves, MG Serrano, D Puiu, ... Nature 431 (7012), 1107, 2004 | 525 | 2004 |
| The genome of Cryptosporidium hominis P Xu, G Widmer, Y Wang, LS Ozaki, JM Alves, MG Serrano, D Puiu, ... Nature 431 (7012), 1107, 2004 | 524 | 2004 |
| The MaSuRCA genome assembler AV Zimin, G Marçais, D Puiu, M Roberts, SL Salzberg, JA Yorke Bioinformatics 29 (21), 2669-2677, 2013 | 521 | 2013 |
| Draft genome sequence of the oilseed species Ricinus communis AP Chan, J Crabtree, Q Zhao, H Lorenzi, J Orvis, D Puiu, ... Nature biotechnology 28 (9), 951, 2010 | 429 | 2010 |
| Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics P Arensburger, K Megy, RM Waterhouse, J Abrudan, P Amedeo, B Antelo, ... Science 330 (6000), 86-88, 2010 | 389 | 2010 |
| Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, LA Blomberg, P Bouffard, ... PLoS biology 8 (9), e1000475, 2010 | 363 | 2010 |
| Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies DB Neale, JL Wegrzyn, KA Stevens, AV Zimin, D Puiu, MW Crepeau, ... Genome biology 15 (3), R59, 2014 | 337 | 2014 |
| Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99 A SL Salzberg, DD Sommer, MC Schatz, AM Phillippy, PD Rabinowicz, ... BMC genomics 9 (1), 204, 2008 | 335 | 2008 |
| Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ... Genome biology 11 (7), R73, 2010 | 314 | 2010 |
| Genome of the opportunistic pathogen Streptococcus sanguinis P Xu, JM Alves, T Kitten, A Brown, Z Chen, LS Ozaki, P Manque, X Ge, ... Journal of bacteriology 189 (8), 3166-3175, 2007 | 224 | 2007 |
| Sequencing and assembly of the 22-Gb loblolly pine genome A Zimin, KA Stevens, MW Crepeau, A Holtz-Morris, M Koriabine, ... Genetics 196 (3), 875-890, 2014 | 215 | 2014 |
| Genomic signatures of evolutionary transitions from solitary to group living KM Kapheim, H Pan, C Li, SL Salzberg, D Puiu, T Magoc, HM Robertson, ... Science 348 (6239), 1139-1143, 2015 | 200 | 2015 |
| The genomes of two key bumblebee species with primitive eusocial organization BM Sadd, SM Barribeau, G Bloch, DC De Graaf, P Dearden, CG Elsik, ... Genome biology 16 (1), 76, 2015 | 190 | 2015 |
| GAGE-B: an evaluation of genome assemblers for bacterial organisms T Magoc, S Pabinger, S Canzar, X Liu, Q Su, D Puiu, LJ Tallon, ... Bioinformatics 29 (14), 1718-1725, 2013 | 163 | 2013 |
| Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. AJ Bogdanove, R Koebnik, H Lu, A Furutani, SV Angiuoli, PB Patil, ... Journal of Bacteriology 193 (19), 5450-5464, 2011 | 159 | 2011 |
| Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation JL Wegrzyn, JD Liechty, KA Stevens, LS Wu, CA Loopstra, ... Genetics 196 (3), 891-909, 2014 | 153 | 2014 |
| Genome sequence of the progenitor of the wheat D genome Aegilops tauschii MC Luo, YQ Gu, D Puiu, H Wang, SO Twardziok, KR Deal, N Huo, T Zhu, ... Nature 551 (7681), 498, 2017 | 145 | 2017 |
| The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum AV Zimin, D Puiu, R Hall, S Kingan, BJ Clavijo, SL Salzberg Gigascience 6 (11), gix097, 2017 | 112 | 2017 |
