Simon Kasif - Google Scholar Citations

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at jhu.edu
T. M. MuraliDepartment of Computer Science, Virginia TechVerified email at cs.vt.edu
Dr. John RachlinNortheastern UniversityVerified email at northeastern.edu
Bradley BernsteinProfessor of Pathology, Harvard UniversityVerified email at broadinstitute.org
Owen WhiteDirector of Bioinformatics, Institute for Genome Sciences, Professor, Department of Epidemiology and Preventative, University ofVerified email at som.umaryland.edu
Sreerama MurthyCEO & Chief Data Scientist, QuadratyxVerified email at quadratyx.com
Martin SteffenBoston UniversityVerified email at bu.edu
Isaac KohaneHarvard Medical School, Children's Hospital, Brigham and Women's HospitalVerified email at hms.harvard.edu
Geoffrey M CooperProfessor Emeritus of Biology, Boston UniversityVerified email at bu.edu
Richard BeigelTemple UniversityVerified email at temple.edu
Manway LiuVerily (formerly Google[x] Life Sciences)Verified email at google.com
Chunming Ding 丁春明Singapore institute for clinical sciencesVerified email at sics.a-star.edu.sg
Peter J ParkHarvard Medical SchoolVerified email at harvard.edu
Lina FallerGinkgo BioworksVerified email at bu.edu
Daniel SegrèProfessor at Boston University, Biology, Biomedical Engineering, Physics, BioinformaticsVerified email at bu.edu
Niels KlitgordViome IncVerified email at viome.com
Mary Elizabeth PattiInvestigator, Joslin Diabetes Center; Associate Professor, Harvard Medical SchoolVerified email at joslin.harvard.edu
Lance FortnowSchool of Computer Science, Georgia Institute of TechnologyVerified email at cc.gatech.edu
Jeremiah FaithIcahn School of Medicine at Mount SinaiVerified email at mssm.edu
James J CollinsMIT, Broad Institute & Harvard's Wyss InstituteVerified email at mit.edu

Simon Kasif

Professor of Biomedical Engineering, Computer Science and Bioinformatics, Boston University

Verified email at bu.edu - Homepage

Systems Biology Computational Biology Diabetes Machine Learning Artificial Intelligence


Title	Cited by	Year
Initial sequencing and analysis of the human genome ES Lander, LM Linton, B Birren, C Nusbaum, MC Zody, J Baldwin, ... Macmillan Publishers Ltd., 2001	24232	2001
Improved microbial gene identification with GLIMMER AL Delcher, D Harmon, S Kasif, O White, SL Salzberg Nucleic acids research 27 (23), 4636-4641, 1999	2410	1999
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles JJ Faith, B Hayete, JT Thaden, I Mogno, J Wierzbowski, G Cottarel, ... PLoS biology 5 (1), e8, 2007	1455	2007
Microbial gene identification using interpolated Markov models SL Salzberg, AL Delcher, S Kasif, O White Nucleic acids research 26 (2), 544-548, 1998	1202	1998
A system for induction of oblique decision trees SK Murthy, S Kasif, S Salzberg Journal of artificial intelligence research 2, 1-32, 1994	1054	1994
Alignment of whole genomes AL Delcher, S Kasif, RD Fleischmann, J Peterson, O White, SL Salzberg Nucleic acids research 27 (11), 2369-2376, 1999	1041	1999
Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains M Ku, RP Koche, E Rheinbay, EM Mendenhall, M Endoh, TS Mikkelsen, ... PLoS genetics 4 (10), e1000242, 2008	912	2008
Reconstructing and reprogramming the tumor-propagating potential of glioblastoma stem-like cells ML Suvà, E Rheinbay, SM Gillespie, AP Patel, H Wakimoto, SD Rabkin, ... Cell 157 (3), 580-594, 2014	464	2014
Predicting protein function from protein/protein interaction data: a probabilistic approach S Letovsky, S Kasif Bioinformatics 19 (suppl_1), i197-i204, 2003	436	2003
Extracting conserved gene expression motifs from gene expression data TM Murali, S Kasif Biocomputing 2003, 77-88, 2002	428	2002
Whole-genome annotation by using evidence integration in functional-linkage networks U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif Proceedings of the National Academy of Sciences 101 (9), 2888-2893, 2004	371	2004
Deep sequencing of the oral microbiome reveals signatures of periodontal disease B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ... PloS one 7 (6), e37919, 2012	276	2012
models for biological sequences SL Salzberg, DB Searls, S Kasif Computational methods in molecular biology 32, 45, 1998	240	1998
RankGene: identification of diagnostic genes based on expression data Y Su, TM Murali, V Pavlovic, M Schaffer, S Kasif Bioinformatics 19 (12), 1578-1579, 2003	211	2003
Network-based analysis of affected biological processes in type 2 diabetes models M Liu, A Liberzon, SW Kong, WR Lai, PJ Park, IS Kohane, S Kasif PLoS genetics 3 (6), e96, 2007	210	2007
OC1: A randomized algorithm for building oblique decision trees SK Murthy, S Kasif, S Salzberg, R Beigel Proceedings of AAAI 93, 322-327, 1993	207	1993
On the parallel complexity of discrete relaxation in constraint satisfaction networks S Kasif Artificial Intelligence 45 (3), 275-286, 1990	191	1990
Identification of functional links between genes using phylogenetic profiles J Wu, S Kasif, C DeLisi Bioinformatics 19 (12), 1524-1530, 2003	180	2003
An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma E Rheinbay, ML Suvà, SM Gillespie, H Wakimoto, AP Patel, M Shahid, ... Cell reports 3 (5), 1567-1579, 2013	176	2013
Induction of oblique decision trees D Heath, S Kasif, S Salzberg IJCAI 1993, 1002-1007, 1993	169	1993

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