| Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus W Martin, T Rujan, E Richly, A Hansen, S Cornelsen, T Lins, D Leister, ... Proceedings of the National Academy of Sciences 99 (19), 12246-12251, 2002 | 1179 | 2002 |
| Recovering evolutionary trees under a more realistic model of sequence evolution. PJ Lockhart, MA Steel, MD Hendy, D Penny Molecular biology and evolution 11 (4), 605-612, 1994 | 1044 | 1994 |
| A framework for the quantitative study of evolutionary trees MD Hendy, D Penny Systematic zoology 38 (4), 297-309, 1989 | 841 | 1989 |
| Molecular quasi-species M Eigen, J McCaskill, P Schuster The Journal of Physical Chemistry 92 (24), 6881-6891, 1988 | 654 | 1988 |
| Branch and bound algorithms to determine minimal evolutionary trees MD Hendy, D Penny Mathematical Biosciences 59 (2), 277-290, 1982 | 641 | 1982 |
| The modern molecular clock L Bromham, D Penny Nature Reviews Genetics 4 (3), 216, 2003 | 597 | 2003 |
| Mass survival of birds across the Cretaceous-Tertiary boundary: molecular evidence A Cooper, D Penny Science 275 (5303), 1109-1113, 1997 | 517 | 1997 |
| Genome-scale phylogeny and the detection of systematic biases MJ Phillips, F Delsuc, D Penny Molecular biology and evolution 21 (7), 1455-1458, 2004 | 393 | 2004 |
| Hexapod origins: monophyletic or paraphyletic? F Nardi, G Spinsanti, JL Boore, A Carapelli, R Dallai, F Frati Science 299 (5614), 1887-1889, 2003 | 372 | 2003 |
| The use of tree comparison metrics D Penny, MD Hendy Systematic Zoology 34 (1), 75-82, 1985 | 345 | 1985 |
| A genome phylogeny for mitochondria among α-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes C Esser, N Ahmadinejad, C Wiegand, C Rotte, F Sebastiani, ... Molecular Biology and Evolution 21 (9), 1643-1660, 2004 | 337 | 2004 |
| Parsimony, likelihood, and the role of models in molecular phylogenetics M Steel, D Penny Molecular biology and evolution 17 (6), 839-850, 2000 | 327 | 2000 |
| Distributions of tree comparison metrics—some new results MA Steel, D Penny Systematic biology 42 (2), 126-141, 1993 | 311 | 1993 |
| The path from the RNA world AM Poole, DC Jeffares, D Penny Journal of Molecular Evolution 46 (1), 1-17, 1998 | 287 | 1998 |
| Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA. RE Hickson, C Simon, A Cooper, GS Spicer, J Sullivan, D Penny Molecular biology and evolution 13 (1), 150-169, 1996 | 285 | 1996 |
| Relics from the RNA world DC Jeffares, AM Poole, D Penny Journal of Molecular Evolution 46 (1), 18-36, 1998 | 278 | 1998 |
| Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution KE Slack, CM Jones, T Ando, GL Harrison, RE Fordyce, U Arnason, ... Molecular biology and evolution 23 (6), 1144-1155, 2006 | 265 | 2006 |
| The biology of intron gain and loss DC Jeffares, T Mourier, D Penny TRENDS in Genetics 22 (1), 16-22, 2006 | 264 | 2006 |
| Complex spliceosomal organization ancestral to extant eukaryotes L Collins, D Penny Molecular biology and evolution 22 (4), 1053-1066, 2005 | 253 | 2005 |
| The root of the mammalian tree inferred from whole mitochondrial genomes MJ Phillips, D Penny Molecular phylogenetics and evolution 28 (2), 171-185, 2003 | 243 | 2003 |