| Integrative analysis of environmental sequences using MEGAN4 DH Huson, S Mitra, HJ Ruscheweyh, N Weber, SC Schuster Genome research 21 (9), 1552-1560, 2011 | 1107 | 2011 |
| MEGAN community edition-interactive exploration and analysis of large-scale microbiome sequencing data DH Huson, S Beier, I Flade, A Górska, M El-Hadidi, S Mitra, ... PLoS computational biology 12 (6), e1004957, 2016 | 489 | 2016 |
| Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ... Nature microbiology 2 (2), 1-12, 2016 | 94 | 2016 |
| The common gut microbe Eubacterium hallii also contributes to intestinal propionate formation C Engels, HJ Ruscheweyh, N Beerenwinkel, C Lacroix, C Schwab Frontiers in microbiology 7, 713, 2016 | 71 | 2016 |
| Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting TA Khan, S Friedensohn, ARG de Vries, J Straszewski, HJ Ruscheweyh, ... Science advances 2 (3), e1501371, 2016 | 70 | 2016 |
| Intestinal dysbiosis, barrier dysfunction, and bacterial translocation account for CKD–related systemic inflammation K Andersen, MS Kesper, JA Marschner, L Konrad, M Ryu, SK Vr, ... Journal of the American Society of Nephrology 28 (1), 76-83, 2017 | 59 | 2017 |
| Endotoxicity of lipopolysaccharide as a determinant of T-cell− mediated colitis induction in mice K Gronbach, I Flade, O Holst, B Lindner, HJ Ruscheweyh, A Wittmann, ... Gastroenterology 146 (3), 765-775, 2014 | 35 | 2014 |
| Trophic interactions of infant bifidobacteria and Eubacterium hallii during L-fucose and fucosyllactose degradation C Schwab, HJ Ruscheweyh, V Bunesova, VT Pham, N Beerenwinkel, ... Frontiers in microbiology 8, 95, 2017 | 25 | 2017 |
| Microbial abundance, activity and population genomic profiling with mOTUs2 A Milanese, DR Mende, L Paoli, G Salazar, HJ Ruscheweyh, M Cuenca, ... Nature communications 10 (1), 1014, 2019 | 13 | 2019 |
| Bioinformatics for precision oncology J Singer, A Irmisch, HJ Ruscheweyh, F Singer, NC Toussaint, ... Briefings in bioinformatics 20 (3), 778-788, 2017 | 12 | 2017 |
| NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis J Singer, HJ Ruscheweyh, AL Hofmann, T Thurnherr, F Singer, ... Bioinformatics 34 (1), 107-108, 2017 | 10 | 2017 |
| Improved metagenome analysis using MEGAN5 M El Hadidi, HJ Ruscheweyh, D Huson InJoint 21st annual international conference on intelligent systems for …, 2013 | 7 | 2013 |
| Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis S Herp, S Brugiroux, D Garzetti, D Ring, LM Jochum, M Beutler, C Eberl, ... Cell host & microbe 25 (5), 681-694. e8, 2019 | 4 | 2019 |
| Gut microbial beta-glucuronidase and glycerol/diol dehydratase activity contribute to dietary heterocyclic amine biotransformation J Zhang, C Lacroix, E Wortmann, HJ Ruscheweyh, S Sunagawa, ... BMC microbiology 19 (1), 99, 2019 | 1 | 2019 |
| Gene expression changes and community turnover differentially shape the global ocean metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019 | 1 | 2019 |
| The dichotomic role of LPS: induction or prevention of intestinal inflammation K Gronbach, I Flade, O Holst, B Lindner, HJ Ruscheweyh, RP Darveau, ... INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY 303, 98-98, 2013 | 1 | 2013 |
| User Manual for MeganServer1. 0 HJ Ruscheweyh | | 2016 |
| An Efficient Pipeline for Microbiome Analysis DH Huson, B Buchfink, HJ Ruscheweyh | | 2015 |
| Influence of the gut microbiota on IBD development I Flade, K Gronbach, B Stecher, D Huson, HJ Ruscheweyh, IB Autenrieth, ... INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY 303, 94-94, 2013 | | 2013 |
| Impact of the intestinal microbiota on homeostasis I Flade, K Gronbach, B Stecher, D Huson, HJ Ruscheweyh, IB Autenrieth, ... INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY 302, 96-96, 2012 | | 2012 |
