| ONCOMINE: a cancer microarray database and integrated data-mining platform DR Rhodes, J Yu, K Shanker, N Deshpande, R Varambally, D Ghosh, ... Neoplasia 6 (1), 1-6, 2004 | 2119 | 2004 |
| Development of human protein reference database as an initial platform for approaching systems biology in humans S Peri, JD Navarro, R Amanchy, TZ Kristiansen, CK Jonnalagadda, ... Genome research 13 (10), 2363-2371, 2003 | 1129 | 2003 |
| Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression DR Rhodes, J Yu, K Shanker, N Deshpande, R Varambally, D Ghosh, ... Proceedings of the National Academy of Sciences 101 (25), 9309-9314, 2004 | 1009 | 2004 |
| Human protein reference database—2006 update GR Mishra, M Suresh, K Kumaran, N Kannabiran, S Suresh, P Bala, ... Nucleic acids research 34 (suppl_1), D411-D414, 2006 | 659 | 2006 |
| Human protein reference database as a discovery resource for proteomics S Peri, JD Navarro, TZ Kristiansen, R Amanchy, V Surendranath, ... Nucleic acids research 32 (suppl_1), D497-D501, 2004 | 570 | 2004 |
| Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets TKB Gandhi, J Zhong, S Mathivanan, L Karthick, KN Chandrika, ... Nature genetics 38 (3), 285, 2006 | 494 | 2006 |
| Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma CP Kubicek, A Herrera-Estrella, V Seidl-Seiboth, DA Martinez, ... Genome biology 12 (4), R40, 2011 | 386 | 2011 |
| Protein glycosylation pathways in filamentous fungi N Deshpande, MR Wilkins, N Packer, H Nevalainen Glycobiology 18 (8), 626-637, 2008 | 152 | 2008 |
| Plasma Proteome Database as a resource for proteomics research B Muthusamy, G Hanumanthu, S Suresh, B Rekha, D Srinivas, L Karthick, ... Proteomics 5 (13), 3531-3536, 2005 | 141 | 2005 |
| GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA N Deshpande, PH Jensen, NH Packer, D Kolarich Journal of proteome research 9 (2), 1063-1075, 2010 | 89 | 2010 |
| A proteomic analysis of salivary glands of female Anopheles gambiae mosquito DE Kalume, M Okulate, J Zhong, R Reddy, S Suresh, N Deshpande, ... Proteomics 5 (14), 3765-3777, 2005 | 82 | 2005 |
| ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform SH Nagaraj, N Deshpande, RB Gasser, S Ranganathan Nucleic Acids Research 35 (suppl_2), W143-W147, 2007 | 78 | 2007 |
| The pathogenic potential of Campylobacter concisus strains associated with chronic intestinal diseases NO Kaakoush, NP Deshpande, MR Wilkins, CG Tan, JA Burgos-Portugal, ... PLoS One 6 (12), e29045, 2011 | 61 | 2011 |
| Small RNA interactome of pathogenic E. coli revealed through crosslinking of RNase E SA Waters, SP McAteer, G Kudla, I Pang, NP Deshpande, TG Amos, ... The EMBO journal 36 (3), 374-387, 2017 | 59 | 2017 |
| Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: validation of genes and alternative mRNA splicing CNI Pang, AP Tay, C Aya, NA Twine, L Harkness, G Hart-Smith, SZ Chia, ... Journal of proteome research 13 (1), 84-98, 2013 | 42 | 2013 |
| Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity NP Deshpande, NO Kaakoush, H Mitchell, K Janitz, MJ Raftery, SS Li, ... PLoS One 6 (7), e22170, 2011 | 36 | 2011 |
| Comparative genomics of Campylobacter concisus isolates reveals genetic diversity and provides insights into disease association NP Deshpande, NO Kaakoush, MR Wilkins, HM Mitchell BMC genomics 14 (1), 585, 2013 | 35 | 2013 |
| Integrative genomics identifies the molecular basis of resistance to azacitidine therapy in myelodysplastic syndromes A Unnikrishnan, E Papaemmanuil, D Beck, NP Deshpande, A Verma, ... Cell Reports 20 (3), 572-585, 2017 | 32 | 2017 |
| Transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen Campylobacter concisus NO Kaakoush, NP Deshpande, SM Man, JA Burgos-Portugal, FA Khattak, ... Infection and immunity 83 (2), 832-845, 2015 | 29 | 2015 |
| Comparative analyses of Campylobacter concisus strains reveal the genome of the reference strain BAA-1457 is not representative of the species NO Kaakoush, NP Deshpande, MR Wilkins, MJ Raftery, K Janitz, ... Gut pathogens 3 (1), 15, 2011 | 28 | 2011 |
