Ali Sharifi-Zarchi - Google Scholar Citations

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	All	Since 2014
Citations	397	384
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Hossein BaharvandRoyan instituteVerified email at royaninstitute.org
Hamidreza ChitsazColorado State UniversityVerified email at chitsazlab.org
Mehdi TotonchiGenetics & Stem cell Departments, Royan InstituteVerified email at royaninstitute.org
Mehdi SadeghiNational institute of genetic engineering and biotechnologyVerified email at nigeb.ac.ir
Marcos J Arauzo-BravoIkerbasque Professor at BioDonostia Health Research Institute, San Sebastian SpainVerified email at biodonostia.org
Ghasem Hosseini SalekdehProfessor of Systems Biology (ABRII & Royan Inst.), Honorary Professor (Macquarie University)Verified email at abrii.ac.ir
Nasser AghdamiAssociated professor of immunology, Royan instituteVerified email at royaninstitute.org
Sharif MoradiAssistant Prof, Royan Institute; Email: sharif.moradi@gmail.com; sharif.moradi@royaninstitute.orgVerified email at royaninstitute.org
Mohammad PakzadDepartment of Regenerative Medicine, Royan Institute for Stem Cell Biology and Technology,Verified email at royaninstitute.org
Razieh KaramzadehKarolinska Institute, Royan Institute, University of TehranVerified email at ki.se
Sara TaleahmadAssistant Professor of Systems Biomedicine, Royan InstituteVerified email at royaninstitute.org
Hamid MahiniUniversity of MarylandVerified email at cs.umd.edu
Omid EtesamiResearcher, Institute for Research in Fundamental Sciences (IPM)Verified email at ipm.ir
Saieed AkbariProfessor of Mathematics, Sharif University of TechnologyVerified email at sharif.edu
Mohammad MahmoodyAssociate Professor, University of VirginiaVerified email at virginia.edu
mohammad hossein karimi-jafariAssistant Professor of Bioinformatics, University of TehranVerified email at ut.ac.ir
Ali Akbar Moosavi-MovahediUniversity of TehranVerified email at ut.ac.ir
Thomas BraunMax-PlanckVerified email at mpi-BN.MPG.de
Faezeh DorriUniversity of MarylandVerified email at umiacs.umd.edu
Keynoosh KhalooghiPhD student at Max-Planck institute for heart and lung researchVerified email at mpi-bn.mpg.de

Ali Sharifi-Zarchi

Assistant Prof. of Bioinformatics, Sharif Univ. of Tech. Research Associate, Royan Institute

Verified email at sharif.ir

Algorithmic Bioiformatics Deep Learning in Computational Biomedicine


Title	Cited by	Year
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310, 2016	130	2016
A universal and robust integrated platform for the scalable production of human cardiomyocytes from pluripotent stem cells H Fonoudi, H Ansari, S Abbasalizadeh, MR Larijani, S Kiani, ... Stem cells translational medicine 4 (12), 1482-1494, 2015	62	2015
Inhibition of TGFβ signaling promotes ground state pluripotency SN Hassani, M Totonchi, A Sharifi-Zarchi, S Mollamohammadi, M Pakzad, ... Stem Cell Reviews and Reports 10 (1), 16-30, 2014	57	2014
Treatment of human embryonic stem cells with different combinations of priming and inducing factors toward definitive endoderm Y Tahamtani, M Azarnia, A Farrokhi, A Sharifi-Zarchi, N Aghdami, ... Stem cells and development 22 (9), 1419-1432, 2012	38	2012
Proteome analysis of ground state pluripotency S Taleahmad, M Mirzaei, LM Parker, SN Hassani, S Mollamohammadi, ... Scientific reports 5, 17985, 2015	21	2015
DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism A Sharifi-Zarchi, D Gerovska, K Adachi, M Totonchi, H Pezeshk, RJ Taft, ... BMC genomics 18 (1), 964, 2017	19	2017
Machine learning and network analysis of molecular dynamics trajectories reveal two chains of red/ox-specific residue interactions in human protein disulfide isomerase R Karamzadeh, MH Karimi-Jafari, A Sharifi-Zarchi, H Chitsaz, ... Scientific reports 7 (1), 3666, 2017	15	2017
Small RNA sequencing reveals Dlk1-Dio3 locus-embedded microRNAs as major drivers of ground-state pluripotency S Moradi, A Sharifi-Zarchi, A Ahmadi, S Mollamohammadi, A Stubenvoll, ... Stem cell reports 9 (6), 2081-2096, 2017	13	2017
Blockage of the epithelial-to-mesenchymal transition is required for embryonic stem cell derivation M Totonchi, SN Hassani, A Sharifi-Zarchi, N Tapia, K Adachi, J Arand, ... Stem cell reports 9 (4), 1275-1290, 2017	7	2017
Transversals in long rectangular arrays S Akbari, O Etesami, H Mahini, M Mahmoody, A Sharifi Discrete mathematics 306 (23), 3011-3013, 2006	7	2006
Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians Y An, A Kawaguchi, C Zhao, A Toyoda, A Sharifi-Zarchi, SA Mousavi, ... Zoological letters 4 (1), 24, 2018	6	2018
Comparative in vitro evaluation of human dental pulp and follicle stem cell commitment R Karamzadeh, MB Eslaminejad, A Sharifi-Zarchi Cell Journal (Yakhteh) 18 (4), 609, 2017	6	2017
ARYANA: Aligning Reads by Yet Another Approach M Gholami, A Arbabi, A Sharifi-Zarchi, H Chitsaz, M Sadeghi BMC bioinformatics 15 (9), S12, 2014	4	2014
Increased robustness of early embryogenesis through collective decision-making by key transcription factors A Sharifi-Zarchi, M Totonchi, K Khaloughi, R Karamzadeh, ... BMC systems biology 9 (1), 23, 2015	3	2015
Natural biased coin encoded in the genome determines cell strategy F Dorri, H Mahini, A Sharifi-Zarchi, M Totonchi, R Tusserkani, H Pezeshk, ... PloS one 9 (8), e103569, 2014	3	2014
An integrated analysis to predict micro‐RNAs targeting both stemness and metastasis in breast cancer stem cells M Rahimi, A Sharifi‐Zarchi, J Firouzi, M Azimi, N Zarghami, E Alizadeh, ... Journal of cellular and molecular medicine 23 (4), 2442-2456, 2019	2	2019
Down-regulation of miR-200c and up-regulation of miR-30c target both stemness and metastasis genes in breast cancer M Rahimi, A Sharifi-Zarchi, N Zarghami, L Geranpayeh, M Ebrahimi, ... Cell J 21 (4), 467-78, 2020	1	2020
Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks F Abdolhosseini, B Azarkhalili, A Maazallahi, A Kamal, SA Motahari, ... Scientific reports 9 (1), 2342, 2019	1	2019
GTED: Graph Traversal Edit Distance AE Boroojeny, A Shrestha, A Sharifi-Zarchi, SR Gallagher, SC Sahinalp, ... International Conference on Research in Computational Molecular Biology, 37-53, 2018	1	2018
Downregulation of extracellular matrix and cell adhesion molecules in cumulus cells of infertile polycystic ovary syndrome women with and without insulin resistance. Cell J … F Hassani, S Oryan, P Eftekhari-Yazdi, M Bazrgar, A Moini, N Nasiri, ... Introduction Polycystic ovary syndrome (PCOS) is a frequent endocrinopathic …, 0	1

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