| Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing NA Bokulich, S Subramanian, JJ Faith, D Gevers, JI Gordon, R Knight, ... Nature methods 10 (1), 57, 2013 | 1394 | 2013 |
| Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ... Nature medicine 22 (3), 250, 2016 | 451 | 2016 |
| A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457, 2017 | 444 | 2017 |
| Microbial biogeography of wine grapes is conditioned by cultivar, vintage, and climate NA Bokulich, JH Thorngate, PM Richardson, DA Mills Proceedings of the National Academy of Sciences 111 (1), E139-E148, 2014 | 407 | 2014 |
| Antibiotics, birth mode, and diet shape microbiome maturation during early life NA Bokulich, J Chung, T Battaglia, N Henderson, M Jay, H Li, AD Lieber, ... Science translational medicine 8 (343), 343ra82-343ra82, 2016 | 376 | 2016 |
| The soil microbiome influences grapevine-associated microbiota I Zarraonaindia, SM Owens, P Weisenhorn, K West, J Hampton-Marcell, ... MBio 6 (2), e02527-14, 2015 | 243 | 2015 |
| Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities NA Bokulich, DA Mills Appl. Environ. Microbiol. 79 (8), 2519-2526, 2013 | 200 | 2013 |
| The microbiology of malting and brewing NA Bokulich, CW Bamforth Microbiol. Mol. Biol. Rev. 77 (2), 157-172, 2013 | 195 | 2013 |
| Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment YR Nobel, LM Cox, FF Kirigin, NA Bokulich, S Yamanishi, I Teitler, ... Nature communications 6, 7486, 2015 | 194 | 2015 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 184 | 2018 |
| Next-generation sequencing reveals significant bacterial diversity of botrytized wine NA Bokulich, CML Joseph, G Allen, AK Benson, DA Mills PloS one 7 (5), e36357, 2012 | 161 | 2012 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6 (1), 90, 2018 | 148 | 2018 |
| Facility-specific “house” microbiome drives microbial landscapes of artisan cheesemaking plants NA Bokulich, DA Mills Appl. Environ. Microbiol. 79 (17), 5214-5223, 2013 | 131 | 2013 |
| Brewhouse-resident microbiota are responsible for multi-stage fermentation of American coolship ale NA Bokulich, CW Bamforth, DA Mills PloS one 7 (4), e35507, 2012 | 128 | 2012 |
| Monitoring seasonal changes in winery-resident microbiota NA Bokulich, M Ohta, PM Richardson, DA Mills PloS one 8 (6), e66437, 2013 | 115 | 2013 |
| Next-generation approaches to the microbial ecology of food fermentations NA Bokulich, DA Mills BMB reports 45 (7), 377-389, 2012 | 102 | 2012 |
| Human milk glycomics and gut microbial genomics in infant feces show a correlation between human milk oligosaccharides and gut microbiota: a proof-of-concept study MLA De Leoz, KM Kalanetra, NA Bokulich, JS Strum, MA Underwood, ... Journal of proteome research 14 (1), 491-502, 2014 | 99 | 2014 |
| Associations among wine grape microbiome, metabolome, and fermentation behavior suggest microbial contribution to regional wine characteristics NA Bokulich, TS Collins, C Masarweh, G Allen, H Heymann, SE Ebeler, ... MBio 7 (3), e00631-16, 2016 | 86 | 2016 |
| Antibiotic perturbation of the murine gut microbiome enhances the adiposity, insulin resistance, and liver disease associated with high-fat diet D Mahana, CM Trent, ZD Kurtz, NA Bokulich, T Battaglia, J Chung, ... Genome medicine 8 (1), 48, 2016 | 79 | 2016 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 73 | 2019 |
David A. MillsPeter J. Shields Endowed Chair at University of California-DavisVerified email at ucdavis.edu
