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| Full-length transcriptome assembly from RNA-Seq data without a reference genome MG Grabherr, BJ Haas, M Yassour, JZ Levin, DA Thompson, I Amit, ... Nature biotechnology 29 (7), 644-652, 2011 | 8633 | 2011 |
| UCHIME improves sensitivity and speed of chimera detection RC Edgar, BJ Haas, JC Clemente, C Quince, R Knight Bioinformatics 27 (16), 2194-2200, 2011 | 7245 | 2011 |
| Structure, function and diversity of the healthy human microbiome C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ... Nature 486, 207-214, 2012 | 4824 | 2012 |
| De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 3393 | 2013 |
| Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons BJ Haas, D Gevers, AM Earl, M Feldgarden, DV Ward, G Giannoukos, ... Genome research 21 (3), 494-504, 2011 | 1887 | 2011 |
| The genome of the African trypanosome Trypanosoma brucei M Berriman, E Ghedin, C Hertz-Fowler, G Blandin, H Renauld, ... Science 309 (5733), 416-422, 2005 | 1631 | 2005 |
| The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease NM El-Sayed, PJ Myler, DC Bartholomeu, D Nilsson, G Aggarwal, ... Science Signalling 309 (5733), 409, 2005 | 1428 | 2005 |
| Corrigendum: Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ... Nature 439 (7075), 502-502, 2006 | 1286* | 2006 |
| A framework for human microbiome research BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ... Nature 486, 215-221, 2012 | 1285 | 2012 |
| Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ... Nature 438 (7071), 1151-1156, 2005 | 1285 | 2005 |
| Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans BJ Haas, S Kamoun, MC Zody, RHY Jiang, RE Handsaker, LM Cano, ... Nature 461 (7262), 393-398, 2009 | 1108 | 2009 |
| Genome sequence of Aedes aegypti, a major arbovirus vector V Nene, JR Wortman, D Lawson, B Haas, C Kodira, ZJ Tu, B Loftus, Z Xi, ... Science Signalling 316 (5832), 1718, 2007 | 1060 | 2007 |
| The genome of the blood fluke Schistosoma mansoni M Berriman, BJ Haas, PT LoVerde, RA Wilson, GP Dillon, GC Cerqueira, ... Nature 460 (7253), 352-358, 2009 | 953 | 2009 |
| The draft genome of the transgenic tropical fruit tree papaya R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ... Carica papaya, 991-996, 2008 | 951* | 2008 |
| The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) R Ming, S Hou, Y Feng, Q Yu, A Dionne-Laporte, JH Saw, P Senin, ... Nature 452 (7190), 991-996, 2008 | 950 | 2008 |
| The TIGR rice genome annotation resource: improvements and new features S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ... Nucleic acids research 35 (suppl 1), D883-D887, 2007 | 897 | 2007 |
| Comparative genomics of trypanosomatid parasitic protozoa NM El-Sayed, PJ Myler, G Blandin, M Berriman, J Crabtree, G Aggarwal, ... Science Signalling 309 (5733), 404, 2005 | 801 | 2005 |
| Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis JM Carlton, RP Hirt, JC Silva, AL Delcher, M Schatz, Q Zhao, JR Wortman, ... Science 315 (5809), 207-212, 2007 | 795 | 2007 |
| Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies BJ Haas, AL Delcher, SM Mount, JR Wortman, RK Smith Jr, LI Hannick, ... Nucleic acids research 31 (19), 5654-5666, 2003 | 737 | 2003 |