| Probalign: multiple sequence alignment using partition function posterior probabilities U Roshan, DR Livesay Bioinformatics 22 (22), 2715-2721, 2006 | 225 | 2006 |
| Diametrical clustering for identifying anti-correlated gene clusters IS Dhillon, EM Marcotte, U Roshan Bioinformatics 19 (13), 1612-1619, 2003 | 130 | 2003 |
| Rec-I-DCM3: a fast algorithmic technique for reconstructing phylogenetic trees UW Roshan, T Warnow, BME Moret, TL Williams Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004 | 125 | 2004 |
| Designing fast converging phylogenetic methods L Nakhleh, U Roshan, K St. John, J Sun, T Warnow Bioinformatics 17 (suppl_1), S190-S198, 2001 | 70 | 2001 |
| Sequence-length requirements for phylogenetic methods BME Moret, U Roshan, T Warnow International Workshop on Algorithms in Bioinformatics, 343-356, 2002 | 60 | 2002 |
| The accuracy of fast phylogenetic methods for large datasets L Nakhleh, BME Moret, U Roshan, K St. John, J Sun, T Warnow Biocomputing 2002, 211-222, 2001 | 55 | 2001 |
| Performance of supertree methods on various data set decompositions U Roshan, BME Moret, TL Williams, T Warnow Phylogenetic Supertrees, 301-328, 2004 | 53 | 2004 |
| Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest U Roshan, S Chikkagoudar, Z Wei, K Wang, H Hakonarson Nucleic acids research 39 (9), e62-e62, 2011 | 48 | 2011 |
| Computational grand challenges in assembling the tree of life: Problems and solutions DA Bader, U Roshan, A Stamatakis Advances in computers 68, 127-176, 2006 | 40 | 2006 |
| Structural and evolutionary considerations for multiple sequence alignment of RNA, and the challenges for algorithms that ignore them KM Kjer, U Roshan, JJ Gillespie Sequence alignment: Methods, models, concepts, and strategies, 103-151, 2009 | 33 | 2009 |
| Reconstruction of large phylogenetic trees: a parallel approach Z Du, F Lin, UW Roshan Computational Biology and Chemistry 29 (4), 273-280, 2005 | 28 | 2005 |
| The performance of phylogenetic methods on trees of bounded diameter L Nakhleh, U Roshan, KS John, J Sun, T Warnow International Workshop on Algorithms in Bioinformatics, 214-226, 2001 | 19 | 2001 |
| The relationship between maximum parsimony scores and phylogenetic tree topologies TL Williams, BMT Berger-Wolf, U Roshan, T Warnow Personal Communication, 2004 | 18 | 2004 |
| Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood Z Du, A Stamatakis, F Lin, U Roshan, L Nakhleh International Conference on High Performance Computing and Communications …, 2005 | 17 | 2005 |
| MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence T Turki, U Roshan BMC genomics 15 (1), 969, 2014 | 13 | 2014 |
| Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities U Roshan, S Chikkagoudar, DR Livesay BMC bioinformatics 9 (1), 61, 2008 | 12 | 2008 |
| Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees U Roshan, DR Livesay, S Chikkagoudar Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06), 159-164, 2006 | 11 | 2006 |
| Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family DR Livesay, PD Kidd, S Eskandari, U Roshan BMC bioinformatics 8 (1), 397, 2007 | 10 | 2007 |
| PRec-I-DCM3: a parallel framework for fast and accurate large scale phylogeny reconstruction C Coarfa, Y Dotsenko, J Mellor-Crummey, L Nakhleh, U Roshan 11th International Conference on Parallel and Distributed Systems (ICPADS'05 …, 2005 | 10 | 2005 |
| PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences S Chikkagoudar, DR Livesay, U Roshan Nucleic acids research 38 (suppl_2), W59-W63, 2010 | 9 | 2010 |
