| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 9317 | 2012 |
| Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005 | 2007 | 2005 |
| Aligning multiple genomic sequences with the threaded blockset aligner M Blanchette, WJ Kent, C Riemer, L Elnitski, AFA Smit, KM Roskin, ... Genome research 14 (4), 708-715, 2004 | 1297 | 2004 |
| Comparative analyses of multi-species sequences from targeted genomic regions JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, ... Nature 424 (6950), 788, 2003 | 715 | 2003 |
| Defining functional DNA elements in the human genome M Kellis, B Wold, MP Snyder, BE Bernstein, A Kundaje, GK Marinov, ... Proceedings of the National Academy of Sciences 111 (17), 6131-6138, 2014 | 539 | 2014 |
| Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution RC Hardison, KM Roskin, S Yang, M Diekhans, WJ Kent, R Weber, ... Genome research 13 (1), 13-26, 2003 | 320 | 2003 |
| Cross-species sequence comparisons: a review of methods and available resources KA Frazer, L Elnitski, DM Church, I Dubchak, RC Hardison Genome research 13 (1), 1-12, 2003 | 279 | 2003 |
| MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences S Schwartz, L Elnitski, M Li, M Weirauch, C Riemer, A Smit, NCS Program, ... Nucleic acids research 31 (13), 3518-3524, 2003 | 259 | 2003 |
| Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques L Elnitski, VX Jin, PJ Farnham, SJM Jones Genome research 16 (12), 1455-1464, 2006 | 258 | 2006 |
| Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences DC King, J Taylor, L Elnitski, F Chiaromonte, W Miller, RC Hardison Genome research 15 (8), 1051-1060, 2005 | 231 | 2005 |
| Distinguishing regulatory DNA from neutral sites L Elnitski, RC Hardison, J Li, S Yang, D Kolbe, P Eswara, MJ O'Connor, ... Genome research 13 (1), 64-72, 2003 | 169 | 2003 |
| Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma JJ Gartner, SCJ Parker, TD Prickett, K Dutton-Regester, ML Stitzel, JC Lin, ... Proceedings of the National Academy of Sciences 110 (33), 13481-13486, 2013 | 139 | 2013 |
| Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat D Kolbe, J Taylor, L Elnitski, P Eswara, J Li, W Miller, R Hardison, ... Genome research 14 (4), 700-707, 2004 | 139 | 2004 |
| Genomic features defining exonic variants that modulate splicing A Woolfe, JC Mullikin, L Elnitski Genome biology 11 (2), R20, 2010 | 102 | 2010 |
| Conserved E Boxes Function as Part of the Enhancer in Hypersensitive Site 2 of the β-Globin Locus Control Region ROLE OF BASIC HELIX-LOOP-HELIX PROTEINS L Elnitski, W Miller, R Hardison Journal of Biological Chemistry 272 (1), 369-378, 1997 | 97 | 1997 |
| Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins M Rijnkels, L Elnitski, W Miller, JM Rosen Genomics 82 (4), 417-432, 2003 | 91 | 2003 |
| Generation and comparative analysis of∼ 3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11. 23 implicated in Williams syndrome U DeSilva, L Elnitski, JR Idol, JL Doyle, W Gan, JW Thomas, S Schwartz, ... Genome research 12 (1), 3-15, 2002 | 91 | 2002 |
| Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes MQ Yang, LM Koehly, LL Elnitski PLoS computational biology 3 (4), e72, 2007 | 90 | 2007 |
| PhenCode: connecting ENCODE data with mutations and phenotype B Giardine, C Riemer, T Hefferon, D Thomas, F Hsu, J Zielenski, Y Sang, ... Human mutation 28 (6), 554-562, 2007 | 85 | 2007 |
| Molecular determinants of NOTCH4 transcription in vascular endothelium J Wu, F Iwata, JA Grass, CS Osborne, L Elnitski, P Fraser, O Ohneda, ... Molecular and cellular biology 25 (4), 1458-1474, 2005 | 76 | 2005 |
