| A cryptic sulfur cycle in oxygen-minimum–zone waters off the Chilean coast DE Canfield, FJ Stewart, B Thamdrup, L De Brabandere, T Dalsgaard, ... Science 330 (6009), 1375-1378, 2010 | 399 | 2010 |
| CRISPR/Cas9 systems have off-target activity with insertions or deletions between target DNA and guide RNA sequences Y Lin, TJ Cradick, MT Brown, H Deshmukh, P Ranjan, N Sarode, BM Wile, ... Nucleic acids research 42 (11), 7473-7485, 2014 | 369 | 2014 |
| Microbial metatranscriptomics in a permanent marine oxygen minimum zone FJ Stewart, O Ulloa, EF DeLong Environmental microbiology 14 (1), 23-40, 2012 | 267 | 2012 |
| Microbial oceanography of anoxic oxygen minimum zones O Ulloa, DE Canfield, EF DeLong, RM Letelier, FJ Stewart Proceedings of the National Academy of Sciences 109 (40), 15996-16003, 2012 | 249 | 2012 |
| Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics FJ Stewart, EA Ottesen, EF DeLong The ISME journal 4 (7), 896, 2010 | 211 | 2010 |
| Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone S Ganesh, DJ Parris, EF DeLong, FJ Stewart The ISME journal 8 (1), 187, 2014 | 174 | 2014 |
| The Calyptogena magnifica chemoautotrophic symbiont genome ILG Newton, T Woyke, TA Auchtung, GF Dilly, RJ Dutton, MC Fisher, ... Science 315 (5814), 998-1000, 2007 | 170 | 2007 |
| Chemosynthetic endosymbioses: adaptations to oxic–anoxic interfaces FJ Stewart, ILG Newton, CM Cavanaugh Trends in microbiology 13 (9), 439-448, 2005 | 168 | 2005 |
| Marine chemosynthetic symbioses CM Cavanaugh, ZP McKiness, ILG Newton, FJ Stewart The Prokaryotes: Volume 1: Symbiotic associations, Biotechnology, Applied …, 2006 | 152 | 2006 |
| Saccharide breakdown and fermentation by the honey bee gut microbiome FJ Lee, DB Rusch, FJ Stewart, HR Mattila, ILG Newton Environmental microbiology 17 (3), 796-815, 2015 | 102 | 2015 |
| Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis FJ Stewart, CR Young, CM Cavanaugh Molecular Biology and Evolution 25 (4), 673-687, 2008 | 94 | 2008 |
| Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile T Dalsgaard, FJ Stewart, B Thamdrup, L De Brabandere, NP Revsbech, ... MBio 5 (6), e01966-14, 2014 | 87 | 2014 |
| Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone S Ganesh, LA Bristow, M Larsen, N Sarode, B Thamdrup, FJ Stewart The ISME journal 9 (12), 2682, 2015 | 78 | 2015 |
| Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria FJ Stewart, CM Cavanaugh Journal of Molecular Evolution 65 (1), 44-67, 2007 | 76 | 2007 |
| Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone JA Bryant, FJ Stewart, JM Eppley, EF DeLong Ecology 93 (7), 1659-1673, 2012 | 73 | 2012 |
| Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)—model systems for studies of symbiont–host adaptation FJ Stewart, CM Cavanaugh Antonie Van Leeuwenhoek 90 (4), 343-360, 2006 | 61 | 2006 |
| Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities FJ Stewart, AK Sharma, JA Bryant, JM Eppley, EF DeLong Genome biology 12 (3), R26, 2011 | 58 | 2011 |
| Symbiosis of thioautotrophic bacteria with Riftia pachyptila FJ Stewart, CM Cavanaugh Molecular basis of symbiosis, 197-225, 2005 | 58 | 2005 |
| NC10 bacteria in marine oxygen minimum zones CC Padilla, LA Bristow, N Sarode, E Garcia-Robledo, EG Ramírez, ... The ISME journal 10 (8), 2067, 2016 | 56 | 2016 |
| Bacteria-algae relationships in Antarctic sea ice FJ Stewart, CH Fritsen Antarctic Science 16 (2), 143-156, 2004 | 56 | 2004 |
