| Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles A Subramanian, P Tamayo, VK Mootha, S Mukherjee, BL Ebert, ... Proceedings of the National Academy of Sciences 102 (43), 15545-15550, 2005 | 18978 | 2005 |
| Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma TA Addona, SE Abbatiello, B Schilling, SJ Skates, DR Mani, DM Bunk, ... Nature biotechnology 27 (7), 633, 2009 | 943 | 2009 |
| When checkpoints fail AG Paulovich, DP Toczyski, LH Hartwell Cell 88 (3), 315-321, 1997 | 769 | 1997 |
| A checkpoint regulates the rate of progression through S phase in S. cerevisiae in response to DNA damage AG Paulovich, LH Hartwell Cell 82 (5), 841-847, 1995 | 652 | 1995 |
| Proteogenomics connects somatic mutations to signalling in breast cancer P Mertins, DR Mani, KV Ruggles, MA Gillette, KR Clauser, P Wang, ... Nature 534 (7605), 55, 2016 | 585 | 2016 |
| Repeatability and reproducibility in proteomic identifications by liquid chromatography− tandem mass spectrometry DL Tabb, L Vega-Montoto, PA Rudnick, AM Variyath, AJL Ham, DM Bunk, ... Journal of proteome research 9 (2), 761-776, 2009 | 382 | 2009 |
| Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach SA Carr, SE Abbatiello, BL Ackermann, C Borchers, B Domon, ... Molecular & Cellular Proteomics 13 (3), 907-917, 2014 | 341 | 2014 |
| Integrated proteogenomic characterization of human high-grade serous ovarian cancer H Zhang, T Liu, Z Zhang, SH Payne, B Zhang, JE McDermott, JY Zhou, ... Cell 166 (3), 755-765, 2016 | 339 | 2016 |
| An automated and multiplexed method for high throughput peptide immunoaffinity enrichment and multiple reaction monitoring mass spectrometry-based quantification of protein … JR Whiteaker, L Zhao, L Anderson, AG Paulovich Molecular & Cellular Proteomics 9 (1), 184-196, 2010 | 313 | 2010 |
| A targeted proteomics–based pipeline for verification of biomarkers in plasma JR Whiteaker, C Lin, J Kennedy, L Hou, M Trute, I Sokal, P Yan, ... Nature biotechnology 29 (7), 625, 2011 | 309 | 2011 |
| A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, ... Bioinformatics 22 (15), 1902-1909, 2006 | 283 | 2006 |
| Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers JR Whiteaker, L Zhao, HY Zhang, LC Feng, BD Piening, L Anderson, ... Analytical biochemistry 362 (1), 44-54, 2007 | 280 | 2007 |
| RAD9, RAD17, and RAD24 Are Required for S Phase Regulation in Saccharomyces cerevisiae in Response to DNA Damage AG Paulovich, RU Margulies, BM Garvik, LH Hartwell Genetics 145 (1), 45-62, 1997 | 222 | 1997 |
| A human proteome detection and quantitation project NL Anderson, NG Anderson, TW Pearson, CH Borchers, AG Paulovich, ... Molecular & Cellular Proteomics 8 (5), 883-886, 2009 | 211 | 2009 |
| The interface between biomarker discovery and clinical validation: the tar pit of the protein biomarker pipeline AG Paulovich, JR Whiteaker, AN Hoofnagle, P Wang PROTEOMICS–Clinical Applications 2 (10‐11), 1386-1402, 2008 | 203 | 2008 |
| Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer JR Whiteaker, H Zhang, L Zhao, P Wang, KS Kelly-Spratt, RG Ivey, ... Journal of proteome research 6 (10), 3962-3975, 2007 | 196 | 2007 |
| Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry B MacLean, DM Tomazela, SE Abbatiello, S Zhang, JR Whiteaker, ... Analytical chemistry 82 (24), 10116-10124, 2010 | 192 | 2010 |
| Ischemia in tumors induces early and sustained phosphorylation changes in stress kinase pathways but does not affect global protein levels P Mertins, F Yang, T Liu, DR Mani, VA Petyuk, MA Gillette, KR Clauser, ... Molecular & cellular proteomics 13 (7), 1690-1704, 2014 | 188 | 2014 |
| Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments A Rauch, M Bellew, J Eng, M Fitzgibbon, T Holzman, P Hussey, M Igra, ... Journal of proteome research 5 (1), 112-121, 2006 | 185 | 2006 |
| Pancreatic tumor pathogenesis reflects the causative genetic lesion EP Sandgren, CJ Quaife, AG Paulovich, RD Palmiter, RL Brinster Proceedings of the National Academy of Sciences 88 (1), 93-97, 1991 | 184 | 1991 |
