Steven Salzberg
Steven Salzberg
Bloomberg Distinguished Professor, Johns Hopkins University
Verified email at jhu.edu - Homepage
TitleCited byYear
Next-generation genome annotation: we still struggle to get it right
SL Salzberg
Genome biology 20 (1), 92, 2019
122019
Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification
FP Breitwieser, SL Salzberg
Bioinformatics, 2019
12019
Author Correction: Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations
M Daya, N Rafaels, TM Brunetti, S Chavan, AM Levin, A Shetty, ...
Nature communications 10 (1), 1-2, 2019
2019
Genome wide association of cold-related traits in coastal Douglas fir
BM Wilhite, DB Neale, R Amanda, S Salzberg, BS Clair
2019 ESA Annual Meeting (August 11--16), 2019
2019
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
D Kim, JM Paggi, C Park, C Bennett, SL Salzberg
Nature biotechnology 37 (8), 907-915, 2019
182019
Whole genome sequencing reveals an NLR-rich expansion at the Xo1 bacterial leaf streak resistance locus in Carolina Gold Select rice and identifies an Xo1 candidate
A Read, M Hutin, G Pertea, L Triplett, A Zimin, MJ Moscou, S Salzberg, ...
2019 IS-MPMI XVIII Congress, 2019
2019
Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities
ET Saitta, R Liang, MCY Lau, CM Brown, NR Longrich, TG Kaye, ...
eLife 8, e46205, 2019
22019
Human contamination in bacterial genomes has created thousands of spurious proteins
FP Breitwieser, M Pertea, AV Zimin, SL Salzberg
Genome research 29 (6), 954-960, 2019
62019
Genomic architecture of complex traits in loblolly pine
AR De La Torre, D Puiu, MW Crepeau, K Stevens, SL Salzberg, ...
New Phytologist 221 (4), 1789-1801, 2019
122019
Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations
M Daya, N Rafaels, TM Brunetti, S Chavan, AM Levin, A Shetty, ...
Nature communications 10 (1), 880, 2019
42019
High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome
A Marrano, M Britton, PA Zaini, A Zimin, R Workman, D Puiu, L Bianco, ...
bioRxiv, 809798, 2019
2019
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
S Kovaka, AV Zimin, GM Pertea, R Razaghi, SL Salzberg, M Pertea
BioRxiv, 694554, 2019
2019
Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing
AC Read, MJ Moscou, AV Zimin, G Pertea, RS Meyer, MD Purugganan, ...
bioRxiv, 675678, 2019
2019
Assembly of a pan-genome from deep sequencing of 910 humans of African descent
RM Sherman, J Forman, V Antonescu, D Puiu, M Daya, N Rafaels, ...
Nature genetics 51 (1), 30, 2019
452019
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise
M Pertea, A Shumate, G Pertea, A Varabyou, FP Breitwieser, YC Chang, ...
Genome biology 19 (1), 208, 2018
312018
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
FP Breitwieser, DN Baker, SL Salzberg
Genome biology 19 (1), 198, 2018
262018
Open questions: How many genes do we have?
SL Salzberg
BMC biology 16 (1), 94, 2018
182018
Development and optimization of metagenomic next-generation sequencing methods for cerebrospinal fluid diagnostics
PJ Simner, HB Miller, FP Breitwieser, GP Monsalve, CA Pardo, ...
Journal of clinical microbiology 56 (9), e00472-18, 2018
52018
The Terabase Search Engine: a large-scale relational database of short-read sequences
R Wilton, SJ Wheelan, AS Szalay, SL Salzberg
Bioinformatics 35 (4), 665-670, 2018
2018
Genomic variation among and within six Juglans species
KA Stevens, K Woeste, S Chakraborty, MW Crepeau, CA Leslie, ...
G3: Genes, Genomes, Genetics 8 (7), 2153-2165, 2018
82018
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