| BEAGLE 3: Improved performance, scaling, and usability for a high-performance computing library for statistical phylogenetics DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ... Systematic biology, 2019 | 13 | 2019 |
| BEAGLE 3 DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ... | | 2019 |
| Using Parsimony-Guided Tree Proposals to Accelerate Convergence in Bayesian Phylogenetic Inference C Zhang, JP Huelsenbeck, F Ronquist bioRxiv, 778571, 2019 | | 2019 |
| Phylogeny Estimation Using Likelihood‐Based Methods JP Huelsenbeck Handbook of Statistical Genomics 4e 2V SET, 177-40, 2019 | | 2019 |
| A Bayesian Approach for Estimating Branch-Specific Speciation and Extinction Rates S Hoehna, WA Freyman, Z Nolen, J Huelsenbeck, MR May, BR Moore bioRxiv, 555805, 2019 | | 2019 |
| Análisis de la biodiversidad en plantas vasculares de la Argentina JJ Morrone, L Aagesen, CA Szumik, FO Zuloaga, O Morrone, R Abell, ... Evolutionary Biogeography of the Andean Region 25 (104), 1-9, 2018 | | 2018 |
| Programming for Evolutionary Biologists JP Huelsenbeck University of California, Berkeley, 2018 | | 2018 |
| Reply to Nakov et al.: Model choice requires biological insight when studying the ancestral habitat of photosynthetic eukaryotes P Sánchez-Baracaldo, G Bianchini, JP Huelsenbeck, JA Raven, D Pisani, ... Proceedings of the National Academy of Sciences 114 (50), E10608-E10609, 2017 | 3 | 2017 |
| Phylogenetic analysis and molecular characterization of Xanthium sibiricum using DNA barcoding, PCR-RFLP, and specific primers S Tomasello, G Heubl Planta medica 83 (11), 946-953, 2017 | 3 | 2017 |
| Parallel power posterior analyses for fast computation of marginal likelihoods in phylogenetics S Hoehna, ML Landis, JP Huelsenbeck BioRxiv, 104422, 2017 | 4 | 2017 |
| Next-generation sequencing of mixed genomic DNA allows efficient assembly of rearranged mitochondrial genomes in Amolops chunganensis and Quasipaa boulengeri S Yuan, Y Xia, Y Zheng, X Zeng PeerJ 4, e2786, 2016 | 14 | 2016 |
| Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures BR Moore, S Höhna, MR May, B Rannala, JP Huelsenbeck Proceedings of the National Academy of Sciences 113 (34), 9569-9574, 2016 | 173 | 2016 |
| Ctenocephalides felis and Ctenocephalides canis: introgressive hybridization? A Zurita, R Callejon, M De Rojas, A Halajian, C Cutillas Systematic Entomology 41 (3), 567-579, 2016 | 5 | 2016 |
| RevBayes: Bayesian phylogenetic inference using graphical models and an interactive model-specification language S Höhna, MJ Landis, TA Heath, B Boussau, N Lartillot, BR Moore, ... Systematic biology 65 (4), 726-736, 2016 | 164 | 2016 |
| Software for systematics and evolution DL Rabosky, H Huang, N Martínez-Abadías, R Mateu, M Niksic, L Russo, ... Systematic Biology 65 (2), 2016 | 1 | 2016 |
| Strepsiptera, phylogenomics and the long branch attraction problem B Boussau, Z Walton, JA Delgado, F Collantes, L Beani, IJ Stewart, ... PLoS One 9 (10), e107709, 2014 | 43 | 2014 |
| Bayesian analysis of partitioned data BR Moore, J McGuire, F Ronquist, JP Huelsenbeck arXiv preprint arXiv:1409.0906, 2014 | 2 | 2014 |
| SOFTWARE FOR SYSTEMATICS AND EVOLUTION DJ Zwickl, JC Stein, RA Wing, D Ware, MJ Sanderson, EA Tripp, ... System 63 (5), 2014 | | 2014 |
| The fossilized birth–death process for coherent calibration of divergence-time estimates TA Heath, JP Huelsenbeck, T Stadler Proceedings of the National Academy of Sciences 111 (29), E2957-E2966, 2014 | 309 | 2014 |
| Probabilistic graphical model representation in phylogenetics S Höhna, TA Heath, B Boussau, MJ Landis, F Ronquist, JP Huelsenbeck Systematic biology 63 (5), 753-771, 2014 | 53 | 2014 |
