Alexei J. Drummond
Alexei J. Drummond
Professor of Computational Biology, University of Auckland
Verified email at cs.auckland.ac.nz - Homepage
TitleCited byYear
Inferring host roles in bayesian phylodynamics of global avian influenza A virus H9N2
J Yang, D Xie, Z Nie, B Xu, AJ Drummond
Virology 538, 86-96, 2019
2019
Bayesian phylodynamics of avian influenza A virus H9N2 in Asia with time-dependent predictors of migration
J Yang, NF Müller, R Bouckaert, B Xu, AJ Drummond
PLoS computational biology 15 (8), 2019
12019
Estimating the biodiversity of terrestrial invertebrates on a forested island using DNA barcodes and metabarcoding data
A Dopheide, LK Tooman, S Grosser, B Agabiti, B Rhode, D Xie, ...
Ecological Applications 29 (4), e01877, 2019
12019
Estimating epidemic incidence and prevalence from genomic data
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, ...
Molecular biology and evolution 36 (8), 1804-1816, 2019
6*2019
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ...
PLoS computational biology 15 (4), e1006650, 2019
402019
SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination
A Jariani, C Warth, K Deforche, P Libin, AJ Drummond, A Rambaut, ...
Virus Evolution 5 (1), vez003, 2019
2019
Approximate Bayesian computation of transcriptional pausing mechanisms
J Douglas, R Kingston, AJ Drummond
bioRxiv, 748210, 2019
2019
Impacts of DNA extraction and PCR on DNA metabarcoding estimates of soil biodiversity
A Dopheide, D Xie, TR Buckley, AJ Drummond, RD Newcomb
Methods in Ecology and Evolution 10 (1), 120-133, 2019
42019
SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination: Supplementary material
A Jariani, C Warth, K Deforche, P Libin, AJ Drummond, A Rambaut, ...
2018
Phylodynamic model adequacy using posterior predictive simulations
S Duchene, R Bouckaert, DA Duchene, T Stadler, AJ Drummond
Systematic biology 68 (2), 358-364, 2018
42018
The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes
T Stadler, A Gavryushkina, RCM Warnock, AJ Drummond, TA Heath
Journal of theoretical biology 447, 41-55, 2018
172018
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
MA Suchard, P Lemey, G Baele, DL Ayres, AJ Drummond, A Rambaut
Virus Evolution 4 (1), vey016, 2018
2162018
Posterior summarization in Bayesian phylogenetics using Tracer 1.7
A Rambaut, AJ Drummond, D Xie, G Baele, MA Suchard
Systematic biology 67 (5), 901-904, 2018
6682018
Bayesian inference and comparison of stochastic transcription elongation models
J Douglas, R Kingston, A Drummond
BioRxiv, 499277, 2018
2018
Inference of species histories in the presence of gene flow
NF Mueller, H Ogilvie, C Zhang, A Drummond, T Stadler
bioRxiv, 348391, 2018
32018
Inferring Species Trees Using Integrative Models of Species Evolution
HA Ogilvie, TG Vaughan, NJ Matzke, GJ Slater, T Stadler, D Welch, ...
bioRxiv, 242875, 2018
12018
Bayesian inference of species networks from multilocus sequence data
C Zhang, HA Ogilvie, AJ Drummond, T Stadler
Molecular biology and evolution 35 (2), 504-517, 2017
542017
bModelTest: Bayesian phylogenetic site model averaging and model comparison
RR Bouckaert, AJ Drummond
BMC evolutionary biology 17 (1), 42, 2017
1302017
Taming the BEAST—A community teaching material resource for BEAST 2
J Barido-Sottani, V Bošková, LD Plessis, D Kühnert, C Magnus, V Mitov, ...
Systematic biology 67 (1), 170-174, 2017
152017
StarBEAST2 brings faster species tree inference and accurate estimates of substitution rates
HA Ogilvie, RR Bouckaert, AJ Drummond
Molecular biology and evolution 34 (8), 2101-2114, 2017
1192017
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Articles 1–20