| Velvet: algorithms for de novo short read assembly using de Bruijn graphs DR Zerbino, E Birney Genome research 18 (5), 821-829, 2008 | 8464 | 2008 |
| Ensembl 2012 P Flicek, MR Amode, D Barrell, K Beal, S Brent, D Carvalho-Silva, ... Nucleic acids research, gkr991, 2011 | 4080 | 2011 |
| Comprehensive molecular characterization of human colon and rectal cancer Cancer Genome Atlas Network Nature 487 (7407), 330, 2012 | 3843 | 2012 |
| Comprehensive genomic characterization of squamous cell lung cancers Cancer Genome Atlas Research Network Nature 489 (7417), 519, 2012 | 2121 | 2012 |
| Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics 28 (8), 1086-1092, 2012 | 1258 | 2012 |
| Ensembl 2015 F Cunningham, MR Amode, D Barrell, K Beal, K Billis, S Brent, ... Nucleic acids research 43 (D1), D662-D669, 2014 | 1209 | 2014 |
| Ensembl 2016 A Yates, W Akanni, MR Amode, D Barrell, K Billis, D Carvalho-Silva, ... Nucleic acids research 44 (D1), D710-D716, 2015 | 1177 | 2015 |
| Ensembl 2018 DR Zerbino, P Achuthan, W Akanni, MR Amode, D Barrell, J Bhai, K Billis, ... Nucleic acids research 46 (D1), D754-D761, 2017 | 1081 | 2017 |
| Genetic effects on gene expression across human tissues GTEx Consortium Nature 550 (7675), 204, 2017 | 720 | 2017 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 496 | 2011 |
| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, M Akerman, T Alioto, ... Nature methods 10 (12), 1177, 2013 | 429 | 2013 |
| Using the Velvet de novo Assembler for Short‐Read Sequencing Technologies DR Zerbino Current protocols in bioinformatics 31 (1), 11.5. 1-11.5. 12, 2010 | 416 | 2010 |
| Genome-wide association study in Asian populations identifies variants in ETS1 and WDFY4 associated with systemic lupus erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010 | 367 | 2010 |
| Ensembl 2017 BL Aken, P Achuthan, W Akanni, MR Amode, F Bernsdorff, J Bhai, K Billis, ... Nucleic acids research 45 (D1), D635-D642, 2016 | 361 | 2016 |
| Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters BM Javierre, OS Burren, SP Wilder, R Kreuzhuber, SM Hill, S Sewitz, ... Cell 167 (5), 1369-1384. e19, 2016 | 343 | 2016 |
| Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler DR Zerbino, GK McEwen, EH Margulies, E Birney PloS one 4 (12), e8407, 2009 | 211 | 2009 |
| The ensembl regulatory build DR Zerbino, SP Wilder, N Johnson, T Juettemann, PR Flicek Genome biology 16 (1), 56, 2015 | 200 | 2015 |
| Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences GD Poznik, Y Xue, FL Mendez, TF Willems, A Massaia, MAW Sayres, ... Nature genetics 48 (6), 593, 2016 | 170 | 2016 |
| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2018 | 152 | 2018 |
| The International Human Epigenome Consortium: a blueprint for scientific collaboration and discovery HG Stunnenberg, S Abrignani, D Adams, M de Almeida, L Altucci, V Amin, ... Cell 167 (5), 1145-1149, 2016 | 152 | 2016 |
