Rob Knight
Rob Knight
Director, Center for Microbiome Innovation; Professor, Pediatrics, Bioengineering and CSE, UCSD
Verified email at ucsd.edu - Homepage
TitleCited byYear
“Fecal microbiome in epidemiologic studies”–Response
R Sinha, E Vogtmann, J Chen, A Amir, J Shi, J Sampson, R Flores, ...
Cancer epidemiology, biomarkers & prevention: a publication of the American …, 2016
42016
1: Frank DN, Pace NR. Gastrointestinal microbiology enters the metagenomics era. Curr Opin Gastroenterol. 2008 Jan; 24 (1): 4-10. Review. PubMed PMID: 18043225.
TA Tucker, MD Schrenzel, R Knight, JI Gordon
102 Dupilumab Decreases Staphylococcus aureus Colonization and Increases Microbial Diversity in Patients With Atopic Dermatitis
C Callewaert, R Knight, T Nakatsuji, JD Hamilton, E Guttman-Yassky, ...
Journal of Investigative Dermatology 139 (9), S231, 2019
2019
361 Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder 362 J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, 363 Knight R …
T Yatsunenko, FE Rey, MJ Manary, I Trehan, MG Dominguez-Bello, ...
Human gut microbiome viewed across age and geography 364, 222-227, 0
4
47.2 EARLY-LIFE PREBIOTICS, PROBIOTICS, AND A STRESS ROBUST PHENOTYPE
M Fleshner, RS Thompson, F Vargas, A González, M Vitaterna, FW Turek, ...
Journal of the American Academy of Child & Adolescent Psychiatry 58 (10 …, 2019
2019
A communal catalogue reveals Earth’s multiscale microbial diversity
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...
Nature 551 (7681), 457, 2017
4442017
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
RT Jones, MS Robeson, CL Lauber, M Hamady, R Knight, N Fierer
The ISME journal 3 (4), 442, 2009
7322009
A core gut microbiome in obese and lean twins
PJ Turnbaugh, M Hamady, T Yatsunenko, BL Cantarel, A Duncan, RE Ley, ...
nature 457 (7228), 480, 2009
57072009
A data analysis and coordination center for the human microbiome project
W Jennifer, G Michelle, C Heather, C Amy, L Konstantinos, C Ken, ...
Genome Biology 11 (Suppl 1), 2010
2010
A data analysis and coordination center for the human microbiome project
J Wortman, M Giglio, H Creasy, A Chen, K Liolios, K Chu, N Davidovics, ...
Genome Biol 11, O13, 2010
102010
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
12852012
A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets
O Koren, D Knights, A Gonzalez, L Waldron, N Segata, R Knight, ...
PLoS computational biology 9 (1), e1002863, 2013
3672013
A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease
C Caussy, A Tripathi, G Humphrey, S Bassirian, S Singh, C Faulkner, ...
Nature communications 10 (1), 1406, 2019
92019
A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis
Y Sun, Y Cai, SM Huse, R Knight, WG Farmerie, X Wang, V Mai
Briefings in bioinformatics 13 (1), 107-121, 2011
1632011
A lightweight, scalable grid computing framework for parallel bioinformatics applications
H De Sterck, R Markel, R Knight
19th International Symposium on High Performance Computing Systems and …, 2005
122005
A meta-analysis of changes in bacterial and archaeal communities with time
A Shade, JG Caporaso, J Handelsman, R Knight, N Fierer
The ISME journal 7 (8), 1493, 2013
2222013
A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
JL Metcalf, LW Parfrey, A Gonzalez, CL Lauber, D Knights, G Ackermann, ...
elife 2, e01104, 2013
1712013
A microbiome foundation for the study of Crohn’s disease
D Gevers, S Kugathasan, D Knights, AD Kostic, R Knight, RJ Xavier
Cell host & microbe 21 (3), 301-304, 2017
212017
A Microbiome-Based Index for Assessing Skin Health and Treatment Effects for Atopic Dermatitis in Children
Z Sun, S Huang, P Zhu, F Yue, H Zhao, M Yang, Y Niu, G Jing, X Su, H Li, ...
MSystems 4 (4), e00293-19, 2019
2019
A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease
M Tong, X Li, LW Parfrey, B Roth, A Ippoliti, B Wei, J Borneman, ...
PloS one 8 (11), e80702, 2013
1232013
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Articles 1–20