Gary J. Olsen
Gary J. Olsen
Verified email at life.uiuc.edu
TitleCited byYear
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research, 2019
2019
The essential genome of the crenarchaeal model Sulfolobus islandicus
C Zhang, APR Phillips, RL Wipfler, GJ Olsen, RJ Whitaker
Nature communications 9 (1), 4908, 2018
102018
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature Biotechnology 36 (7), 2018
782018
PATRIC as a unique resource for studying antimicrobial resistance
DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ...
Briefings in bioinformatics, 2017
342017
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2016
3472016
PATtyFams: protein families for the microbial genomes in the PATRIC database
JJ Davis, S Gerdes, GJ Olsen, R Olson, GD Pusch, M Shukla, V Vonstein, ...
Frontiers in microbiology 7, 118, 2016
182016
The DOE systems biology knowledgebase (KBase)
AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ...
BioRxiv, 096354, 2016
342016
The repABC Plasmids with Quorum-Regulated Transfer Systems in Members of the Rhizobiales Divide into Two Structurally and Separately Evolving …
ME Wetzel, GJ Olsen, V Chakravartty, SK Farrand
Genome biology and evolution 7 (12), 3337-3357, 2015
62015
Genomic comparison of the closely-related Salmonella enterica serovars Enteritidis, Dublin and Gallinarum
TD Matthews, R Schmieder, GGZ Silva, J Busch, N Cassman, BE Dutilh, ...
PLoS One 10 (6), e0126883, 2015
212015
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5, 8365, 2015
5312015
In search of genome annotation consistency: solid gene clusters and how to use them
JJ Davis, GJ Olsen, R Overbeek, V Vonstein, F Xia
3 Biotech 4 (3), 331-335, 2014
62014
Quorum-dependent mannopine-inducible conjugative transfer of an Agrobacterium opine-catabolic plasmid
ME Wetzel, KS Kim, M Miller, GJ Olsen, SK Farrand
Journal of bacteriology 196 (5), 1031-1044, 2014
102014
KBase: An Integrated Knowledgebase for Predictive Biology and Environmental Research
A Palumbo, J Baumohl, A Best, J Bischof, B Bowen, T Brettin, T Brown, ...
Proceedings of the International Conference on Bioinformatics …, 2014
12014
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ...
Nucleic acids research 42 (D1), D206-D214, 2013
20212013
Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes
JJ Davis, F Xia, RA Overbeek, GJ Olsen
International journal of systematic and evolutionary microbiology 63 (Pt 7 …, 2013
282013
Parsimony
GJ Olsen
Brenner's Encyclopedia of Genetics: Second Edition, 229-232, 2013
2013
RNA modification subsystems in the SEED database
V de Crécy-Lagard, G Olsen
Madame Curie Bioscience Database [Internet], 2013
22013
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ...
PloS one 7 (10), e48053, 2012
1162012
Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome
KA Karberg, GJ Olsen, JJ Davis
Proceedings of the National Academy of Sciences 108 (50), 20154-20159, 2011
362011
Differences between the normal vaginal bacterial community of baboons and that of humans
AJ Rivera, JA Frank, R Stumpf, AA Salyers, BA Wilson, GJ Olsen, S Leigh
American journal of primatology 73 (2), 119-126, 2011
212011
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Articles 1–20