| Metagenomic next-generation sequencing of the 2014 Ebola virus disease outbreak in the Democratic Republic of the Congo T Li, P Mbala-Kingebeni, SN Naccache, J Thézé, J Bouquet, S Federman, ... Journal of clinical microbiology 57 (9), e00827-19, 2019 | | 2019 |
| A39 Reconstruction of Ebola chains of transmission using sequence and epidemiological data A Robert, J Edmunds, R Eggo, AM Henao-Restrepo, PS Gsell, ... Virus Evolution 5 (Supplement_1), vez002. 038, 2019 | | 2019 |
| Quantifying the contribution of different aged men and women to onwards transmission of HIV-1 in generalised epidemics in sub-Saharan Africa: A modelling and phylogenetics … W Probert, M Hall, X Xi, R Sauter, T Golubchik, D Bonsall, ... Wiley 22 (S5), 2019 | | 2019 |
| Gradients do grow on trees: a linear-time -dimensional gradient for statistical phylogenetics X Ji, Z Zhang, A Holbrook, A Nishimura, G Baele, A Rambaut, P Lemey, ... arXiv preprint arXiv:1905.12146, 2019 | | 2019 |
| Massive parallelization boosts big Bayesian multidimensional scaling A Holbrook, P Lemey, G Baele, S Dellicour, D Brockmann, A Rambaut, ... arXiv preprint arXiv:1905.04582, 2019 | | 2019 |
| PANGEA-HIV 2: Phylogenetics And Networks for Generalised Epidemics in Africa L Abeler-Dörner, MK Grabowski, A Rambaut, D Pillay, C Fraser Current Opinion in HIV and AIDS 14 (3), 173-180, 2019 | 1 | 2019 |
| BEAGLE 3: Improved performance, scaling, and usability for a high-performance computing library for statistical phylogenetics DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ... Systematic biology, 2019 | 13 | 2019 |
| Bayesian inference of evolutionary histories under time-dependent substitution rates JV Membrebe, MA Suchard, A Rambaut, G Baele, P Lemey Molecular biology and evolution, 2019 | 6 | 2019 |
| BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, ... PLoS computational biology 15 (4), e1006650, 2019 | 40 | 2019 |
| SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination A Jariani, C Warth, K Deforche, P Libin, AJ Drummond, A Rambaut, ... Virus Evolution 5 (1), vez003, 2019 | | 2019 |
| Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building MI Nelson, JO Lloyd-Smith, L Simonsen, A Rambaut, EC Holmes, ... Epidemics 26, 116-127, 2019 | 2 | 2019 |
| High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE G Baele, DL Ayres, A Rambaut, MA Suchard, P Lemey Evolutionary Genomics, 691-722, 2019 | | 2019 |
| Night lizards (Xantusia) and their discoverers on the Baja California Peninsula A Rambaut, MA Suchard, W Xie, AJ Drummon SONORAN HERPETOLOGIST 32 (2), 25, 2019 | | 2019 |
| Tracking virus outbreaks in the twenty-first century ND Grubaugh, JT Ladner, P Lemey, OG Pybus, A Rambaut, EC Holmes, ... Nature microbiology 4 (1), 10-19, 2019 | 20 | 2019 |
| SANTA-SIM: Simulating Viral Sequence Evolution Dynamics Under Selection and Recombination: Supplementary material A Jariani, C Warth, K Deforche, P Libin, AJ Drummond, A Rambaut, ... | | 2018 |
| HIV sequence compendium 2018 BT Foley, BTM Korber, TK Leitner, C Apetrei, B Hahn, I Mizrachi, J Mullins, ... Los Alamos National Lab.(LANL), Los Alamos, NM (United States), 2018 | 82 | 2018 |
| Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 MA Suchard, P Lemey, G Baele, DL Ayres, AJ Drummond, A Rambaut Virus Evolution 4 (1), vey016, 2018 | 216 | 2018 |
| Phylodynamic assessment of intervention strategies for the West African Ebola virus outbreak S Dellicour, G Baele, G Dudas, NR Faria, OG Pybus, MA Suchard, ... Nature communications 9 (1), 2222, 2018 | 15 | 2018 |
| Pandemics: spend on surveillance, not prediction EC Holmes, A Rambaut, KG Andersen Nature 558 (7709), 180, 2018 | 29 | 2018 |
| Posterior summarization in Bayesian phylogenetics using Tracer 1.7 A Rambaut, AJ Drummond, D Xie, G Baele, MA Suchard Systematic biology 67 (5), 901-904, 2018 | 668 | 2018 |
