David Swofford
David Swofford
Research Scientist, Duke University
Verified email at duke.edu
TitleCited byYear
BEAGLE 3: Improved performance, scaling, and usability for a high-performance computing library for statistical phylogenetics
DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ...
Systematic biology, 2019
132019
BEAGLE 3
DL Ayres, MP Cummings, G Baele, AE Darling, PO Lewis, DL Swofford, ...
2019
Estimation of Speciation Times Under the Multispecies Coalescent
J Peng, D Swofford, L Kubatko
bioRxiv, 681023, 2019
2019
Contemporaneous radiations of fungi and plants linked to symbiosis
F Lutzoni, MD Nowak, ME Alfaro, V Reeb, J Miadlikowska, M Krug, ...
Nature communications 9 (1), 5451, 2018
212018
Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family
WT White, S Corrigan, L Yang, AC Henderson, AL Bazinet, DL Swofford, ...
Zoological Journal of the Linnean Society 182 (1), 50-75, 2017
552017
PhyloOncology: understanding cancer through phylogenetic analysis
JA Somarelli, KE Ware, R Kostadinov, JM Robinson, H Amri, M Abu-Asab, ...
Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1867 (2), 101-108, 2017
132017
Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past
AD Yoder, CR Campbell, MB Blanco, M Dos Reis, JU Ganzhorn, ...
Proceedings of the National Academy of Sciences 113 (29), 8049-8056, 2016
382016
Natural hybridization between genera that diverged from each other approximately 60 million years ago
CJ Rothfels, AK Johnson, PH Hovenkamp, DL Swofford, HC Roskam, ...
The American Naturalist 185 (3), 433-442, 2015
442015
Phycas: software for Bayesian phylogenetic analysis
PO Lewis, MT Holder, DL Swofford
Systematic Biology 64 (3), 525-531, 2015
222015
Phycas User Manual Version 2.2
PO Lewis, MT Holder, DL Swofford
2014
Variable tree topology stepping-stone marginal likelihood estimation
D Bryant, DL Swofford, PO Lewis, MT Holder
Bayesian Phylogenetics, 125-142, 2014
2014
Variable tree topology stepping-stone marginal likelihood estimation
MT Holder, PO Lewis, DL Swofford, D Bryant
Bayesian Phylogenetics, 125-142, 2014
92014
Using mitogenomic and nuclear ribosomal sequence data to investigate the phylogeny of the Xiphinema americanum species complex
IA Zasada, A Peetz, DK Howe, LJ Wilhelm, D Cheam, DR Denver, ...
PLoS One 9 (2), e90035, 2014
222014
An extraordinary tail – integrative review of the agamid genus Xenagama
P Wagner, T Mazuch, AM Bauer
Journal of Zoological Systematics and Evolutionary Research 51 (2), 144-164, 2013
112013
Tripylina gorganensis n. sp.(Triplonchida: Tripylidae) from northern Iran
R Asghari, E Pourjam, R Heydari, ZQ Zhao, FA Ramaji
Nematology 14 (5), 613-621, 2012
52012
Hyphal tip growth and nuclear migration
MJ Cafaro, MJ Cafaro, MJ Cafaro, PM Fallah, MA Klich, R Ridgway, ...
Mycologia 104 (1), 331-335, 2012
2012
BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics
DL Ayres, A Darling, DJ Zwickl, P Beerli, MT Holder, PO Lewis, ...
Systematic biology 61 (1), 170-173, 2011
3482011
The mega‐matrix tree of life: using genome‐scale horizontal gene transfer and sequence evolution data as information about the vertical history of life
E Kurt Lienau, R DeSalle, M Allard, EW Brown, D Swofford, JA Rosenfeld, ...
Cladistics 27 (4), 417-427, 2011
142011
Matrona taoi spec. nov., a new damselfly species from northern Vietnam (Odonata: Calopterygidae)
QT Phan, M Haemaelaeinen
Zootaxa 2927 (1), 63-68, 2011
42011
Comparative analysis of the primate X-inactivation center region and reconstruction of the ancestral primate XIST locus
JE Horvath, CB Sheedy, SL Merrett, AB Diallo, DL Swofford, ED Green, ...
Genome research 21 (6), 850-862, 2011
142011
The system can't perform the operation now. Try again later.
Articles 1–20