Sudhir Kumar
Sudhir Kumar
Director, iGEM, Carnell Professor, Temple University
Verified email at temple.edu - Homepage
TitleCited byYear
''MacTrees made easy''-Review of''Phylogenetic trees made easy: a how-to manual for molecular biologists''by Barry G. Hall
S Kumar
Molecular Phylogenetics and Evolution 1 (27), 165-167, 2003
12003
18S rRNA data indicate that Aschelminthes are polyphyletic in origin and consist of at least three distinct clades.
B Winnepenninckx, T Backeljau, LY Mackey, JM Brooks, R De Wachter, ...
Molecular Biology and Evolution 12 (6), 1132-1137, 1995
1831995
A bag-of-words approach for Drosophila gene expression pattern annotation
S Ji, YX Li, ZH Zhou, S Kumar, J Ye
BMC bioinformatics 10 (1), 119, 2009
452009
A genomic timescale for the origin of eukaryotes
SB Hedges, H Chen, S Kumar, DYC Wang, AS Thompson, H Watanabe
BMC Evolutionary Biology 1 (1), 4, 2001
2252001
A mesh generation and machine learning framework for Drosophila gene expression pattern image analysis
W Zhang, D Feng, R Li, A Chernikov, N Chrisochoides, C Osgood, ...
BMC bioinformatics 14 (1), 372, 2013
112013
A molecular evolutionary reference for the human variome
L Liu, K Tamura, M Sanderford, VE Gray, S Kumar
Molecular biology and evolution 33 (1), 245-254, 2015
92015
A molecular timescale for vertebrate evolution
S Kumar, SB Hedges
Nature 392 (6679), 917, 1998
20231998
A new method for detecting autocorrelation of evolutionary rates in large phylogenies
Q Tao, K Tamura, F Battistuzzi, S Kumar
Molecular Biology and Evolution, 2019
2019
A new method for inferring timetrees from temporally sampled molecular sequences
S Miura, K Tamura, SLK Pond, LA Huuki, J Priest, J Deng, S Kumar
bioRxiv, 620187, 2019
12019
A new method of inference of ancestral nucleotide and amino acid sequences.
Z Yang, S Kumar, M Nei
Genetics 141 (4), 1641-1650, 1995
6101995
A protocol for diagnosing the effect of calibration priors on posterior time estimates: a case study for the Cambrian explosion of animal phyla
FU Battistuzzi, P Billing-Ross, O Murillo, A Filipski, S Kumar
Molecular biology and evolution 32 (7), 1907-1912, 2015
232015
A stepwise algorithm for finding minimum evolution trees.
S Kumar
Molecular biology and evolution 13 (4), 584-593, 1996
1361996
Accurate timetrees require accurate calibrations
SB Hedges, Q Tao, M Walker, S Kumar
Proceedings of the National Academy of Sciences 115 (41), E9510-E9511, 2018
22018
Adaptive landscape of protein variation in human exomes
R Patel, MD Sanderford, TR Lanham, K Tamura, A Platt, BS Gilksberg, ...
Molecular biology and evolution, msy107, 2018
32018
Advances in time estimation methods for molecular data
S Kumar, SB Hedges
Molecular biology and evolution 33 (4), 863-869, 2016
542016
Adventures in Evolution: The Narrative of Tardigrada, Trundlers in Time
C Babaian, S Kumar
The American Biology Teacher 81 (8), 543-552, 2019
2019
Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites.
Z Yang, S Kumar
Molecular Biology and Evolution 13 (5), 650-659, 1996
1781996
Association of orthodenticle with natural variation for early embryonic patterning in Drosophila melanogaster
LM Goering, PK Hunt, C Heighington, C Busick, P Pennings, J Hermisson, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2009
162009
Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression
L Yuan, C Pan, S Ji, M McCutchan, ZH Zhou, SJ Newfeld, S Kumar, J Ye
Bioinformatics 30 (2), 266-273, 2013
132013
Automated annotation of Drosophila gene expression patterns using a controlled vocabulary
S Ji, L Sun, R Jin, S Kumar, J Ye
Bioinformatics 24 (17), 1881-1888, 2008
402008
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