Sudhir Kumar
Sudhir Kumar
Director, iGEM, Carnell Professor, Temple University
Verified email at temple.edu - Homepage
TitleCited byYear
Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach
A Chroni, T Vu, S Miura, S Kumar
Cancers 11 (12), 1880, 2019
2019
On estimating evolutionary probabilities of population variants
R Patel, S Kumar
BMC Evolutionary Biology 19 (1), 133, 2019
2019
Somatic Selection Distinguishes Oncogenes and Tumor Suppressor Genes
P Chandrashekar, N Ahmadinejad, J Wang, A Sekulic, JB Egan, ...
Bioinformatics, 2019
2019
Molecular biology and evolution of cancer: from discovery to action
JA Somarelli, H Gardner, VL Cannataro, EF Gunady, AM Boddy, ...
Molecular biology and evolution, 2019
12019
Adventures in Evolution: The Narrative of Tardigrada, Trundlers in Time
C Babaian, S Kumar
The American Biology Teacher 81 (8), 543-552, 2019
2019
Biological relevance of computationally predicted pathogenicity of noncoding variants
L Liu, MD Sanderford, R Patel, P Chandrashekar, G Gibson, S Kumar
Nature communications 10 (1), 330, 2019
72019
Power and pitfalls of computational methods for inferring clone phylogenies and mutation orders from bulk sequencing data
S Miura, T Vu, J Deng, T Buturla, J Choi, S Kumar
bioRxiv, 697318, 2019
2019
Reliable confidence intervals for RelTime estimates of evolutionary divergence times
Q Tao, K Tamura, B Mello, S Kumar
bioRxiv, 677286, 2019
2019
A new method for inferring timetrees from temporally sampled molecular sequences
S Miura, K Tamura, SLK Pond, LA Huuki, J Priest, J Deng, S Kumar
bioRxiv, 620187, 2019
12019
Molecular dating for phylogenies containing a mix of populations and species
B Mello, Q Tao, S Kumar
bioRxiv, 536656, 2019
12019
A new method for detecting autocorrelation of evolutionary rates in large phylogenies
Q Tao, K Tamura, F Battistuzzi, S Kumar
Molecular Biology and Evolution, 2019
2019
Somatic evolutionary timings of driver mutations
K Gomez, S Miura, LA Huuki, BS Spell, JP Townsend, S Kumar
BMC cancer 18 (1), 85, 2018
72018
Accurate timetrees require accurate calibrations
SB Hedges, Q Tao, M Walker, S Kumar
Proceedings of the National Academy of Sciences 115 (41), E9510-E9511, 2018
22018
Computational enhancement of single-cell sequences for inferring tumor evolution
S Miura, LA Huuki, T Buturla, T Vu, K Gomez, S Kumar
Bioinformatics 34 (17), i917-i926, 2018
72018
Adaptive landscape of protein variation in human exomes
R Patel, MD Sanderford, TR Lanham, K Tamura, A Platt, BS Gilksberg, ...
Molecular biology and evolution, msy107, 2018
32018
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
S Kumar, G Stecher, M Li, C Knyaz, K Tamura
Molecular biology and evolution 35 (6), 1547-1549, 2018
15722018
Neutral theory, disease mutations, and personal exomes
S Kumar, R Patel
Molecular biology and evolution 35 (6), 1297-1303, 2018
22018
Theoretical foundation of the RelTime method for estimating divergence times from variable evolutionary rates
K Tamura, Q Tao, S Kumar
Molecular biology and evolution 35 (7), 1770-1782, 2018
222018
Predicting clone genotypes from tumor bulk sequencing of multiple samples
S Miura, K Gomez, O Murillo, LA Huuki, T Vu, T Buturla, S Kumar
bioRxiv, 341180, 2018
72018
RelTime relaxes the strict molecular clock throughout the phylogeny
FU Battistuzzi, Q Tao, L Jones, K Tamura, S Kumar
bioRxiv, 220194, 2018
82018
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