Oliver Stegle - Google Scholar Citations

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	All	Since 2014
Citations	18244	17167
h-index	48	47
i10-index	85	81

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Co-authors

Karsten BorgwardtProfessor of Machine Learning in the Life Sciences at ETH ZurichVerified email at bsse.ethz.ch
Christoph LippertProfessor, Hasso Plattner Institute, Universität PotsdamVerified email at hpi.de
Wolf ReikHead, Epigenetics Programme, Babraham Institute Cambridge, UKVerified email at babraham.ac.uk
John MarioniEMBL-EBIVerified email at ebi.ac.uk
Francesco Paolo CasaleMicrosoft ResearchVerified email at microsoft.com
Gunnar RätschProfessor, ETH ZürichVerified email at inf.ethz.ch
Leopold PartsFaculty at Wellcome Sanger Institute; Senior Researcher (part-time) at University of TartuVerified email at sanger.ac.uk
Richard DurbinDept of Genetics, University of CambridgeVerified email at cam.ac.uk
Detlef WeigelMax Planck Institute for Developmental BiologyVerified email at weigelworld.org
John WinnPrincipal Researcher, Machine Learning Group, Microsoft Research CambridgeVerified email at microsoft.com
Neil D. LawrenceUniversity of CambridgeVerified email at cl.cam.ac.uk
Stephen ClarkBabraham InstituteVerified email at babraham.ac.uk
Richard MottWeldon Professor of Computational Genetics, University College London, UKVerified email at ucl.ac.uk
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems; and Distinguished Amazon ScholarVerified email at tuebingen.mpg.de
Magnus NordborgGregor Mendel InstituteVerified email at gmi.oeaw.ac.at
David MacKayProfessor of Natural Philosophy, Cavendish Laboratory, University of CambridgeVerified email at mrao.cam.ac.uk
Zoubin GhahramaniProfessor, University of Cambridge, and Chief Scientist, UberVerified email at eng.cam.ac.uk
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Eileen E FurlongEuropean Molecular Biology LaboratoryVerified email at embl.de
Sarah A. TeichmannWellcome Sanger Institute & University of Cambridge

Oliver Stegle

German Cancer Research Center (DKFZ) & EMBL Heidelberg

Verified email at dkfz.de - Homepage

Systems Genetics Single-cell genomics Computational Biology Statistical Genomics EMBL-EBI-Research-Group


Title	Cited by	Year
A global reference for human genetic variation 1000 Genomes Project Consortium Nature 526 (7571), 68, 2015	4756	2015
Transcriptome and genome sequencing uncovers functional variation in humans T Lappalainen, M Sammeth, MR Friedländer, P AC‘t Hoen, J Monlong, ... Nature 501 (7468), 506, 2013	1243	2013
An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75, 2015	976	2015
Whole-genome sequencing of multiple Arabidopsis thaliana populations J Cao, K Schneeberger, S Ossowski, T Günther, S Bender, J Fitz, ... Nature Genetics 43 (10), 956-963, 2011	855	2011
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells F Buettner, KN Natarajan, FP Casale, V Proserpio, A Scialdone, FJ Theis, ... Nature biotechnology 33 (2), 155, 2015	642	2015
Computational and analytical challenges in single-cell transcriptomics O Stegle, SA Teichmann, JC Marioni Nature Reviews Genetics 16 (3), 133-145, 2015	581	2015
Multiple reference genomes and transcriptomes for Arabidopsis thaliana X Gan, O Stegle, J Behr, JG Steffen, P Drewe, KL Hildebrand, R Lyngsoe, ... Nature 477 (7365), 419-423, 2011	555	2011
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome C Becker, J Hagmann, J Müller, D Koenig, O Stegle, K Borgwardt, ... Nature 480 (7376), 245, 2011	520	2011
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity SA Smallwood, HJ Lee, C Angermueller, F Krueger, H Saadeh, J Peat, ... Nature methods 11 (8), 817, 2014	494	2014
Deep learning for computational biology C Angermueller, T Pärnamaa, L Parts, O Stegle Molecular systems biology 12 (7), 2016	493	2016
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. SMIII Consortium Nature Biotechnology 32 (9), 903-914, 2014	462	2014
Patterns of cis regulatory variation in diverse human populations BE Stranger, SB Montgomery, AS Dimas, L Parts, O Stegle, CE Ingle, ... PLoS genetics 8 (4), e1002639, 2012	441	2012
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses O Stegle, L Parts, M Piipari, J Winn, R Durbin Nature protocols 7 (3), 500, 2012	385	2012
Science forum: the human cell atlas A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ... Elife 6, e27041, 2017	382	2017
Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters BM Javierre, OS Burren, SP Wilder, R Kreuzhuber, SM Hill, S Sewitz, ... Cell 167 (5), 1369-1384. e19, 2016	343	2016
A Bayesian framework to account for complex non-genetic factors in gene expression levels greatly increases power in eQTL studies O Stegle, L Parts, R Durbin, J Winn PLoS computational biology 6 (5), e1000770, 2010	316	2010
Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity C Angermueller, SJ Clark, HJ Lee, IC Macaulay, MJ Teng, TX Hu, ... Nature methods 13 (3), 229, 2016	261	2016
DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation MJ Dubin, P Zhang, D Meng, MS Remigereau, EJ Osborne, FP Casale, ... elife 4, e05255, 2015	216	2015
Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis O Windram, P Madhou, S McHattie, C Hill, R Hickman, E Cooke, ... The Plant Cell 24 (9), 3530-3557, 2012	205	2012
Genetic drivers of epigenetic and transcriptional variation in human immune cells L Chen, B Ge, FP Casale, L Vasquez, T Kwan, D Garrido-Martín, S Watt, ... Cell 167 (5), 1398-1414. e24, 2016	203	2016

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